Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_144

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_143: 8511 - KOG4136 Predicted mitochondrial cholesterol transporter, at 356168 to 357922 8511 mRNA_144: 8512 - K00698 CHS1 chitin synthase, at 358360 to 365387 8512 mRNA_145: 8513 - KOG3299 Uncharacterized conserved protein, at 365672 to 367146 8513

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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357,702 + 8511 mRNA_143 0.87 -0.1
357,818 - -0.1
357,821 - 0.0
357,848 - 2.2
357,851 - -0.2
357,968 + 0.2
357,976 + -0.4
357,977 - 1.9
357,987 - -0.5
357,987 + 0.2
357,994 + -0.4
357,997 - 2.5
358,000 - -0.6
358,000 - -0.3
358,005 - -0.3
358,005 - 0.2
358,006 - -0.0
358,006 + -0.1
358,079 - 0.5
358,123 - 2.1
358,126 - -0.5
358,131 - -0.6
358,133 - 0.2
358,133 - 0.5
358,134 - -1.4
358,141 + -0.6
358,151 + -0.9
358,156 + 0.8
358,157 + 0.1
358,157 + 0.7
358,161 + 0.3
358,254 + -1.5
358,281 - 0.4
358,290 - 0.8
358,314 + 0.8
358,432 - -0.3
358,470 - -1.4
358,513 + -1.0
358,604 - 0.8
358,609 + 0.9
358,627 - -0.4
358,640 + 2.1
358,789 + 0.7
359,212 + 8512 mRNA_144 0.12 1.1
359,509 - 8512 mRNA_144 0.16 -0.2
359,921 - 8512 mRNA_144 0.22 0.1
360,046 - 8512 mRNA_144 0.24 -0.1
360,355 + 8512 mRNA_144 0.28 -1.9
360,470 - 8512 mRNA_144 0.30 0.9
360,491 + 8512 mRNA_144 0.30 -0.6
360,492 - 8512 mRNA_144 0.30 -2.0
360,657 - 8512 mRNA_144 0.33 -0.2
361,622 + 8512 mRNA_144 0.46 -0.8
361,839 - 8512 mRNA_144 0.50 0.5
361,956 + 8512 mRNA_144 0.51 0.6
361,962 + 8512 mRNA_144 0.51 -0.9
362,349 + 8512 mRNA_144 0.57 0.8
362,496 - 8512 mRNA_144 0.59 -0.2
362,591 - 8512 mRNA_144 0.60 -0.5
362,625 + 8512 mRNA_144 0.61 1.1
362,930 - 8512 mRNA_144 0.65 1.0
362,989 - 8512 mRNA_144 0.66 0.9
362,990 - 8512 mRNA_144 0.66 -0.3
363,040 - 8512 mRNA_144 0.67 0.9
363,099 - 8512 mRNA_144 0.67 -0.4
363,249 - 8512 mRNA_144 0.70 -0.2
363,970 + 8512 mRNA_144 0.80 -0.7
364,014 + 8512 mRNA_144 0.80 0.9
364,443 + 8512 mRNA_144 0.87 -1.3
364,446 + 8512 mRNA_144 0.87 -1.3
364,591 + 8512 mRNA_144 0.89 1.1
364,603 + 8512 mRNA_144 0.89 0.2
365,192 + -0.9
365,197 + -0.5
365,314 + 0.4
365,440 + -0.7
365,465 - 0.7
365,472 - 0.3
365,517 + -0.0
365,617 + -0.0
365,631 + -1.4
365,759 - 0.1
365,759 - 2.1
365,766 + 0.7