Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1: 8369 - K12198 CHMP5, VPS60 charged multivesicular body protein 5, at 1571 to 2453 8369 mRNA_2: 8370 - PRINTS-Proline rich extensin signature-PR01217, at 3233 to 7809 8370

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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595 + -3.0
609 - 0.3
637 - -0.6
651 + 1.2
654 + 0.2
659 - 0.1
663 + 1.1
672 - -0.3
673 + -0.4
685 + 0.2
725 + 3.6
790 - 0.8
791 + -0.1
798 + -0.8
798 + -0.7
804 - -1.6
821 + 0.3
860 + 0.3
899 - -0.8
916 + 1.1
939 + 0.1
957 + 0.2
975 - 1.7
976 + 0.5
996 - -1.6
1,005 + 0.3
1,005 - 0.1
1,007 - 1.4
1,052 + -1.8
1,058 + 1.2
1,070 + 1.4
1,113 - 0.8
1,115 - 1.7
1,117 + -0.3
1,207 + 0.9
1,257 + -0.8
1,285 - -1.8
1,359 - 0.2
1,422 + -0.3
1,960 + 8369 mRNA_1 0.44 -0.1
2,268 + 8369 mRNA_1 0.79 1.1
2,361 - 8369 mRNA_1 0.89 -3.3
2,441 + -2.2
2,550 + 0.2
2,552 - -1.0
2,564 + 0.0
2,701 + -0.8
2,839 - 0.2
2,853 + -0.7
2,946 - -1.5
3,005 - -1.0
3,125 - -0.5
3,136 + -0.5