Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8461

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8460: 16828 - KOG0527 HMG-box transcription factor, at 1287256 to 1290060 16828 mRNA_8461: 16829 - BLAST Copper radical oxidase [Trametes cinnabarina], at 1290366 to 1291802 16829 mRNA_8462: 16830 - Hypothetical Protein, at 1292206 to 1292868 16830

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,289,479 + 16828 mRNA_8460 0.79 -0.0
1,289,589 + 16828 mRNA_8460 0.83 0.5
1,289,670 - 16828 mRNA_8460 0.86 1.3
1,290,149 - -1.8
1,290,164 - 0.0
1,290,357 - 0.4
1,290,376 + -0.1
1,290,440 - -0.4
1,290,512 + 16829 mRNA_8461 0.10 0.1
1,290,615 + 16829 mRNA_8461 0.17 1.0
1,290,794 - 16829 mRNA_8461 0.30 0.5
1,290,814 - 16829 mRNA_8461 0.31 -0.6
1,291,022 - 16829 mRNA_8461 0.46 0.4
1,291,025 + 16829 mRNA_8461 0.46 0.6
1,291,049 + 16829 mRNA_8461 0.48 0.7
1,291,166 + 16829 mRNA_8461 0.56 -0.1
1,291,439 - 16829 mRNA_8461 0.75 0.2
1,291,619 - 16829 mRNA_8461 0.87 1.3
1,291,776 + 0.7
1,291,797 + 0.4
1,291,837 - -0.0
1,291,864 - 1.2
1,291,891 + -1.0
1,292,018 + 0.2
1,292,026 + -1.4
1,292,030 - 1.2
1,292,031 + -1.2
1,292,179 - 1.2
1,292,184 + -0.2
1,292,188 - 0.9
1,292,193 - -0.6
1,292,196 + 0.1
1,292,341 + 16830 mRNA_8462 0.20 0.1
1,292,349 - 16830 mRNA_8462 0.22 0.6
1,292,351 - 16830 mRNA_8462 0.22 0.1
1,292,351 - 16830 mRNA_8462 0.22 0.4
1,292,351 - 16830 mRNA_8462 0.22 0.6
1,292,355 - 16830 mRNA_8462 0.22 0.2
1,292,361 + 16830 mRNA_8462 0.23 -0.7
1,292,376 + 16830 mRNA_8462 0.26 -0.1
1,292,457 + 16830 mRNA_8462 0.38 0.4
1,292,493 - 16830 mRNA_8462 0.43 0.3
1,292,500 - 16830 mRNA_8462 0.44 -0.4
1,292,501 + 16830 mRNA_8462 0.44 -1.5
1,292,512 + 16830 mRNA_8462 0.46 0.3
1,292,635 - 16830 mRNA_8462 0.65 -0.8
1,292,639 - 16830 mRNA_8462 0.65 0.6
1,292,659 + 16830 mRNA_8462 0.68 -0.2