Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8430

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8429: 16797 - Hypothetical Protein, at 1207475 to 1209032 16797 mRNA_8430: 16798 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 1209562 to 1211995 16798 mRNA_8431: 16799 - K15105 SLC25A12_13, AGC solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13, at 1212231 to 1215205 16799

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,208,581 - 16797 mRNA_8429 0.71 1.9
1,208,738 - 16797 mRNA_8429 0.81 1.9
1,208,919 - 0.5
1,208,923 - 0.3
1,209,024 - 0.7
1,209,169 - -0.1
1,209,170 + 0.7
1,209,238 + 1.7
1,209,341 - -0.8
1,209,419 + 0.3
1,209,451 - -0.5
1,209,460 + 0.8
1,209,476 + 0.5
1,210,049 + 16798 mRNA_8430 0.20 -0.3
1,210,069 - 16798 mRNA_8430 0.21 -1.2
1,210,116 - 16798 mRNA_8430 0.23 -0.3
1,210,119 + 16798 mRNA_8430 0.23 2.6
1,210,134 - 16798 mRNA_8430 0.24 0.8
1,210,167 + 16798 mRNA_8430 0.25 -0.1
1,210,198 - 16798 mRNA_8430 0.26 -1.1
1,210,628 + 16798 mRNA_8430 0.44 -0.0
1,210,634 + 16798 mRNA_8430 0.44 1.2
1,210,660 - 16798 mRNA_8430 0.45 1.6
1,210,825 + 16798 mRNA_8430 0.52 0.2
1,210,934 - 16798 mRNA_8430 0.56 0.7
1,210,934 - 16798 mRNA_8430 0.56 0.0
1,210,940 + 16798 mRNA_8430 0.57 -1.5
1,210,940 + 16798 mRNA_8430 0.57 1.1
1,210,961 + 16798 mRNA_8430 0.57 0.8
1,211,206 - 16798 mRNA_8430 0.68 0.1
1,211,237 - 16798 mRNA_8430 0.69 1.5
1,211,263 - 16798 mRNA_8430 0.70 1.0
1,211,271 + 16798 mRNA_8430 0.70 1.4
1,211,376 + 16798 mRNA_8430 0.75 -0.4
1,211,419 + 16798 mRNA_8430 0.76 -0.4
1,211,521 + 16798 mRNA_8430 0.80 1.3
1,211,546 + 16798 mRNA_8430 0.82 0.4
1,211,619 - 16798 mRNA_8430 0.85 0.3
1,211,675 - 16798 mRNA_8430 0.87 0.5
1,211,932 - 1.6
1,211,951 - -1.0
1,212,070 + -0.5
1,212,106 + 0.7
1,212,130 - 1.8
1,212,146 + -0.7
1,212,188 - 0.2
1,212,264 - 1.6
1,212,264 - 0.2
1,212,558 - 16799 mRNA_8431 0.11 -0.5
1,212,687 - 16799 mRNA_8431 0.15 -1.0
1,212,691 + 16799 mRNA_8431 0.15 2.7