Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8067

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8066: 16434 - K20181 VPS18, PEP3 vacuolar protein sorting-associated protein 18, at 341792 to 345856 16434 mRNA_8067: 16435 - K12399 AP3S AP-3 complex subunit sigma, at 346568 to 347476 16435 mRNA_8068: 16436 - KOG1198 Zinc-binding oxidoreductase, at 347734 to 349027 16436

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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345,866 + 0.8
346,030 - 0.6
346,117 - 0.6
346,124 + -0.5
346,124 + 0.2
346,130 + -0.4
346,161 + -0.5
346,258 - 1.2
346,280 - 2.1
346,287 - 2.3
346,288 + -0.4
346,439 + -0.2
346,445 - -0.2
346,453 + 1.1
346,458 - -0.6
346,462 - 1.1
346,470 - 0.6
346,472 - -0.3
346,541 + -2.0
346,542 - 0.8
347,015 + 16435 mRNA_8067 0.49 0.7
347,088 + 16435 mRNA_8067 0.57 2.5
347,286 + 16435 mRNA_8067 0.79 1.2
347,476 - -0.5
347,504 + 0.9
347,563 + -0.3
347,658 - 0.3
347,660 + 0.8
347,674 - 1.1
347,754 + -0.1
347,772 - -1.2
347,779 + -1.4
347,798 + 0.4
347,799 - 3.0
347,918 - 16436 mRNA_8068 0.14 0.6
347,920 - 16436 mRNA_8068 0.14 0.8
347,930 - 16436 mRNA_8068 0.15 -1.0
347,970 + 16436 mRNA_8068 0.18 0.6
347,973 + 16436 mRNA_8068 0.18 -0.3
347,986 + 16436 mRNA_8068 0.19 -0.8
348,013 + 16436 mRNA_8068 0.22 0.8
348,258 - 16436 mRNA_8068 0.40 -0.5
348,296 + 16436 mRNA_8068 0.43 -1.2
348,393 - 16436 mRNA_8068 0.51 -0.8