Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8013

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8012: 16380 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,HMMPfam-RNA recognition motif (a.k.a. RRM, RBD, or RNP domain)-PF14259,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 209272 to 211609 16380 mRNA_8013: 16381 - SUPERFAMILY--SSF58113, at 212070 to 213325 16381 mRNA_8014: 16382 - HMMPfam-Protein of unknown function (DUF1769)-PF08588, at 213638 to 214851 16382

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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211,199 + 16380 mRNA_8012 0.82 1.7
211,228 + 16380 mRNA_8012 0.84 2.6
211,761 - 0.5
211,775 - 1.9
211,777 - -0.7
211,780 + 0.6
211,783 - -0.6
211,785 - -0.1
211,788 + 0.9
211,790 - 1.0
211,840 - 2.5
211,965 - 0.8
211,978 - -1.2
211,981 + -0.5
211,982 + -0.1
211,997 - 0.4
212,002 - 0.6
212,122 - 1.1
212,128 - -0.2
212,154 + 0.6
212,181 + 0.4
212,198 - 16381 mRNA_8013 0.10 1.6
212,294 - 16381 mRNA_8013 0.18 1.1
212,444 + 16381 mRNA_8013 0.30 2.5
212,577 + 16381 mRNA_8013 0.40 0.4
212,750 - 16381 mRNA_8013 0.54 0.9
213,429 - 1.6
213,537 - 0.5
213,573 - 0.1
213,580 - 0.0
213,585 + 2.4
213,636 - 1.0
213,643 - -0.2
213,649 - 0.1
213,651 + 0.4
213,651 + 2.2
213,757 - 0.9
213,766 + 16382 mRNA_8014 0.11 0.8
213,777 - 16382 mRNA_8014 0.11 2.6
213,780 - 16382 mRNA_8014 0.12 2.7
213,785 - 16382 mRNA_8014 0.12 0.3
213,786 + 16382 mRNA_8014 0.12 1.8
213,798 - 16382 mRNA_8014 0.13 2.2
213,804 - 16382 mRNA_8014 0.14 -0.1
213,934 + 16382 mRNA_8014 0.24 -0.9
214,101 + 16382 mRNA_8014 0.38 -0.4
214,105 + 16382 mRNA_8014 0.38 0.7