Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7833

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7832: 16200 - K14843 PES1, NOP7 pescadillo, at 1166361 to 1168538 16200 mRNA_7833: 16201 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1168816 to 1171622 16201 mRNA_7834: 16202 - HMMPfam-Sulfate transporter family-PF00916,HMMPfam-STAS domain-PF01740,HMMPfam-Sulfate transporter N-terminal domain with GLY motif-PF13792,ProSiteProfiles-STAS domain profile.-PS50801,SUPERFAMILY--SSF52091, at 1172095 to 1175017 16202

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,168,604 + 1.7
1,168,625 + 0.8
1,168,631 + 0.4
1,168,634 - 0.6
1,168,637 - 0.1
1,168,642 + 1.5
1,168,669 + -0.1
1,168,669 + 1.5
1,168,676 - 0.2
1,168,688 + 1.0
1,168,794 - -0.4
1,168,819 + 0.9
1,168,826 + -2.7
1,168,961 + 0.5
1,169,086 - 0.4
1,169,237 - 16201 mRNA_7833 0.15 1.7
1,169,398 + 16201 mRNA_7833 0.21 0.0
1,170,119 + 16201 mRNA_7833 0.46 0.4
1,170,129 + 16201 mRNA_7833 0.47 0.9
1,170,553 + 16201 mRNA_7833 0.62 0.7
1,170,573 - 16201 mRNA_7833 0.63 -1.5
1,170,849 + 16201 mRNA_7833 0.72 3.8
1,171,122 - 16201 mRNA_7833 0.82 1.0
1,171,681 - 1.3
1,171,685 + -0.1
1,171,705 - 1.5
1,171,715 - -0.1
1,171,833 - -0.3
1,171,836 - 0.6
1,171,847 - 0.0
1,171,848 - 1.7
1,171,850 + -0.4
1,171,851 + 1.2
1,171,856 - -0.2
1,171,858 + 0.1
1,171,858 - 0.2
1,171,862 + -0.7
1,171,872 - 0.5
1,171,994 - -0.5
1,172,006 - 0.5
1,172,011 - 0.6
1,172,015 - -1.8
1,172,114 - 0.3
1,172,146 - 0.3
1,172,181 + 0.7
1,172,196 + 2.5
1,172,247 + 1.4
1,172,263 - 0.1
1,172,576 + 16202 mRNA_7834 0.16 0.7