Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7634

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7633: 16001 - KOG1947 Leucine rich repeat proteins, some proteins contain F-box, at 730629 to 733694 16001 mRNA_7634: 16002 - HMMPfam-Protein of unknown function (DUF1264)-PF06884, at 734155 to 735362 16002 mRNA_7635: 16003 - K02865 RP-L10Ae, RPL10A large subunit ribosomal protein L10Ae, at 735814 to 737148 16003

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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733,300 - 16001 mRNA_7633 0.87 0.3
733,322 - 16001 mRNA_7633 0.88 0.6
733,669 + -1.7
733,864 - 0.1
733,949 + -0.1
733,951 + 0.9
734,087 + -0.5
734,091 + -0.9
734,105 - -0.3
734,122 + 0.9
734,140 + 2.3
734,835 - 16002 mRNA_7634 0.56 -0.3
734,840 + 16002 mRNA_7634 0.57 0.4
735,165 + 16002 mRNA_7634 0.84 2.3
735,266 - 2.1
735,274 + -0.2
735,429 + 0.5
735,440 + 1.1
735,454 - -1.4