Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7541

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7540: 15908 - K01012 bioB biotin synthase, at 522757 to 524526 15908 mRNA_7541: 15909 - K04564 SOD2 superoxide dismutase, Fe-Mn family, at 524745 to 525930 15909 mRNA_7542: 15910 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 526059 to 527753 15910

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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524,570 - 0.1
524,574 - -1.3
524,705 - -0.6
524,717 - 0.3
524,720 + 0.2
524,720 + -2.6
524,734 + -2.4
524,742 - -0.6
524,744 - 0.2
524,749 + -1.0
524,751 + -0.3
524,752 + -1.1
524,752 + 2.1
524,858 - -0.1
524,858 - 0.9
524,860 + -0.6
524,860 + -2.5
524,861 + -1.0
524,861 + -0.6
524,861 + -1.4
524,861 + -1.3
524,861 + -2.2
524,861 + -0.7
524,861 + -0.3
524,861 + -3.6
524,861 + -1.9
524,861 + -0.7
524,862 + -0.3
524,862 - -1.2
524,864 + 15909 mRNA_7541 0.10 -0.5
524,864 - 15909 mRNA_7541 0.10 -0.4
524,864 - 15909 mRNA_7541 0.10 1.0
524,864 - 15909 mRNA_7541 0.10 -1.6
524,864 - 15909 mRNA_7541 0.10 -0.8
524,864 - 15909 mRNA_7541 0.10 1.0
524,864 - 15909 mRNA_7541 0.10 -1.0
524,867 + 15909 mRNA_7541 0.10 -1.9
524,867 + 15909 mRNA_7541 0.10 -0.6
524,879 - 15909 mRNA_7541 0.11 -1.4
524,894 + 15909 mRNA_7541 0.13 -1.1
524,984 - 15909 mRNA_7541 0.20 -2.2
525,034 - 15909 mRNA_7541 0.24 -1.0
525,039 + 15909 mRNA_7541 0.25 -1.0
525,044 + 15909 mRNA_7541 0.25 -0.1
525,118 + 15909 mRNA_7541 0.31 -1.6
525,147 + 15909 mRNA_7541 0.34 -1.8
525,173 - 15909 mRNA_7541 0.36 -2.5
525,181 - 15909 mRNA_7541 0.37 -1.0
525,186 - 15909 mRNA_7541 0.37 -1.5
525,225 + 15909 mRNA_7541 0.40 1.3
525,230 + 15909 mRNA_7541 0.41 2.3
525,266 - 15909 mRNA_7541 0.44 -1.1
525,290 + 15909 mRNA_7541 0.46 -1.4
525,510 - 15909 mRNA_7541 0.65 -1.0
525,584 - 15909 mRNA_7541 0.71 -0.3
525,614 - 15909 mRNA_7541 0.73 -0.5
525,654 - 15909 mRNA_7541 0.77 -0.3
525,670 + 15909 mRNA_7541 0.78 -1.4
525,779 - 15909 mRNA_7541 0.87 -0.6
525,854 - -1.1
525,929 - -0.9
526,365 - 15910 mRNA_7542 0.18 0.4
526,381 - 15910 mRNA_7542 0.19 -0.1
526,812 + 15910 mRNA_7542 0.44 -0.4