Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7167

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7166: 15534 - K01626 E2.5.1.54, aroF, aroG, aroH 3-deoxy-7-phosphoheptulonate synthase, at 1033157 to 1035237 15534 mRNA_7167: 15535 - ProSiteProfiles-Zinc finger C3H1-type profile.-PS50103, at 1035415 to 1036383 15535 mRNA_7168: 15536 - HMMPfam-WD domain, G-beta repeat-PF00400,HMMPfam-PFU (PLAA family ubiquitin binding)-PF09070,PRINTS-G protein beta WD-40 repeat signature-PR00320,ProSiteProfiles-Trp-Asp (WD) repeats profile.-PS50082,ProSiteProfiles-Trp-Asp (WD) repeats circular profile.-PS50294,ProSiteProfiles-PFU domain profile.-PS51394,SMART-WD40 repeats-SM00320,SUPERFAMILY--SSF50978, at 1036576 to 1038409 15536

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,034,859 - 15534 mRNA_7166 0.82 1.1
1,034,859 + 15534 mRNA_7166 0.82 0.9
1,034,870 + 15534 mRNA_7166 0.82 0.1
1,035,042 + -1.8
1,035,143 + -0.7
1,035,183 + 1.1
1,035,208 - 1.6
1,035,222 + 1.9
1,035,268 - 1.2
1,035,293 - -1.7
1,035,319 + 0.1
1,035,348 + -0.1
1,035,376 + 0.0
1,035,419 + -0.3
1,035,420 - -0.9
1,035,459 - 0.5
1,035,466 + 0.3
1,035,519 + 15535 mRNA_7167 0.11 -0.0
1,035,570 + 15535 mRNA_7167 0.16 -2.0
1,035,644 - 15535 mRNA_7167 0.24 0.1
1,035,658 + 15535 mRNA_7167 0.25 -0.4
1,035,664 - 15535 mRNA_7167 0.26 0.2
1,035,665 + 15535 mRNA_7167 0.26 0.8
1,035,687 + 15535 mRNA_7167 0.28 -0.8
1,035,737 - 15535 mRNA_7167 0.33 0.2
1,035,887 + 15535 mRNA_7167 0.49 0.1
1,036,045 + 15535 mRNA_7167 0.65 1.2
1,036,189 - 15535 mRNA_7167 0.80 0.4
1,036,265 + 15535 mRNA_7167 0.88 -1.4
1,036,281 + 15535 mRNA_7167 0.89 0.9
1,036,298 + 2.1
1,036,354 + 0.2
1,036,357 - 2.2
1,036,416 - 1.0
1,036,418 - -0.1
1,036,480 + 0.6
1,036,486 + 1.4
1,036,522 + -2.0
1,036,531 - 1.1
1,036,538 - 2.3
1,036,538 - 1.4
1,036,539 + -0.0
1,036,545 + 1.2
1,036,553 - -0.8
1,036,555 + 1.7
1,036,558 + 1.0
1,036,569 + -0.1
1,036,571 - 0.2
1,036,575 - 0.1
1,036,576 + -0.9
1,036,577 - 0.3
1,036,582 - 0.5
1,036,587 + 0.2
1,036,591 + -1.3
1,036,596 + 0.2
1,036,621 + 0.3
1,036,630 + -0.5
1,036,632 - -0.2
1,036,635 + 1.5
1,036,643 + 0.7
1,036,681 - 2.4
1,036,681 - 0.6
1,036,692 + -0.4
1,036,698 - -1.2
1,036,713 + -1.0
1,036,724 + -0.1
1,036,740 + 1.5
1,036,775 + 15536 mRNA_7168 0.11 -1.4
1,036,789 + 15536 mRNA_7168 0.12 -1.0
1,036,867 + 15536 mRNA_7168 0.16 -0.1
1,036,895 + 15536 mRNA_7168 0.17 -0.1
1,036,901 + 15536 mRNA_7168 0.18 -1.2
1,036,906 + 15536 mRNA_7168 0.18 0.4
1,036,906 - 15536 mRNA_7168 0.18 1.2
1,036,908 - 15536 mRNA_7168 0.18 -0.3
1,036,918 + 15536 mRNA_7168 0.19 0.8
1,036,938 + 15536 mRNA_7168 0.20 -0.1
1,036,952 - 15536 mRNA_7168 0.21 0.3
1,036,972 + 15536 mRNA_7168 0.22 -0.1
1,037,005 + 15536 mRNA_7168 0.23 0.2
1,037,017 - 15536 mRNA_7168 0.24 1.1
1,037,054 - 15536 mRNA_7168 0.26 -1.2
1,037,056 - 15536 mRNA_7168 0.26 -0.4
1,037,070 + 15536 mRNA_7168 0.27 0.6
1,037,073 + 15536 mRNA_7168 0.27 0.9
1,037,087 + 15536 mRNA_7168 0.28 -0.1
1,037,164 - 15536 mRNA_7168 0.32 0.2
1,037,213 + 15536 mRNA_7168 0.35 1.1
1,037,221 - 15536 mRNA_7168 0.35 1.6