Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7109

Experiments: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7108: 15476 - HMMPfam-Arrestin (or S-antigen), C-terminal domain-PF02752,SMART-Arrestin (or S-antigen), C-terminal domain-SM01017,SUPERFAMILY--SSF81296, at 899228 to 903559 15476 mRNA_7109: 15477 - HMMPfam-C2 domain-PF00168,ProSiteProfiles-C2 domain profile.-PS50004,SMART-Protein kinase C conserved region 2 (CalB)-SM00239,SUPERFAMILY--SSF49562, at 903883 to 906158 15477 mRNA_7110: 15478 - HMMPfam-Zinc-binding dehydrogenase-PF00107,HMMPfam-Alcohol dehydrogenase GroES-like domain-PF08240,SMART-Enoylreductase-SM00829,SUPERFAMILY--SSF50129,SUPERFAMILY--SSF51735, at 906529 to 908168 15478

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
903,092 + 15476 mRNA_7108 0.89 2.4
903,105 + 15476 mRNA_7108 0.89 -0.7
903,248 - 0.6
903,294 + 0.2
903,390 + -1.4
903,408 - 0.0
903,427 + -0.6
903,429 + 2.7
903,690 + 0.6
903,721 - 1.1
903,723 + 1.4
903,745 + -0.1
903,894 - -0.1
903,902 + -1.5
904,066 - 0.1
904,505 - 15477 mRNA_7109 0.27 1.0
905,179 - 15477 mRNA_7109 0.57 -1.0
905,322 + 15477 mRNA_7109 0.63 0.2
905,528 + 15477 mRNA_7109 0.72 1.3
905,785 - 15477 mRNA_7109 0.84 -0.0
905,787 + 15477 mRNA_7109 0.84 -0.0
905,817 - 15477 mRNA_7109 0.85 -2.0
906,052 - 0.4
906,087 + 0.4
906,127 + -0.6
906,197 - -0.6
906,208 + 0.2
906,644 + 0.4
906,652 + -1.0
907,109 + 15478 mRNA_7110 0.35 0.7