Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6979

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6978: 15346 - KOG1014 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3, at 584489 to 585687 15346 mRNA_6979: 15347 - KOG2789 Putative Zn-finger protein, at 586264 to 588274 15347 mRNA_6980: 15348 - SUPERFAMILY--SSF51445, at 588631 to 590610 15348

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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585,415 - 15346 mRNA_6978 0.77 0.9
585,450 - 15346 mRNA_6978 0.80 1.8
585,726 - 0.3
585,861 - -0.5
585,874 - -0.6
585,880 + -0.0
585,888 - -0.2
585,890 + -0.0
585,913 + -0.1
585,916 + 1.5
585,917 + -0.5
585,932 + -0.1
586,034 + 2.6
586,054 - 0.2
586,054 + 0.2
586,066 + -1.2
586,188 - -1.1
586,198 + -0.5
586,199 - 0.5
586,204 - 0.6
586,213 + -0.0
586,218 - 0.3
586,224 - -1.4
586,228 + -0.0
586,230 - 0.7
586,353 - 0.1
586,355 - 1.1
586,361 - -0.0
586,364 + -0.7
586,377 + 1.2
586,378 + 0.1
586,382 + -0.3
586,655 + 15347 mRNA_6979 0.19 0.4
586,672 + 15347 mRNA_6979 0.20 0.7
586,800 + 15347 mRNA_6979 0.27 0.1
586,822 - 15347 mRNA_6979 0.28 0.3
586,945 + 15347 mRNA_6979 0.34 -1.0
586,950 - 15347 mRNA_6979 0.34 0.1
587,112 - 15347 mRNA_6979 0.42 0.1
587,121 + 15347 mRNA_6979 0.43 -2.6
587,208 + 15347 mRNA_6979 0.47 0.8
587,345 - 15347 mRNA_6979 0.54 0.8
587,397 - 15347 mRNA_6979 0.56 0.5
587,725 + 15347 mRNA_6979 0.73 1.1
587,815 + 15347 mRNA_6979 0.77 0.2
587,979 + 15347 mRNA_6979 0.85 0.4
587,984 - 15347 mRNA_6979 0.86 2.3
588,227 - 1.0
588,266 - -0.2
588,272 + -1.5
588,392 - 1.5
588,569 + 0.3
588,581 - -0.0
588,585 + -0.3
588,586 - 0.1
588,694 - 0.7
588,730 - 2.2
588,752 - 0.5
589,042 + 15348 mRNA_6980 0.21 1.7
589,193 - 15348 mRNA_6980 0.28 -0.6
589,197 + 15348 mRNA_6980 0.29 1.6
589,254 + 15348 mRNA_6980 0.31 0.2