Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6908

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6907: 15275 - K14016 UFD1 ubiquitin fusion degradation protein 1, at 403238 to 404908 15275 mRNA_6908: 15276 - K01907 AACS, acsA acetoacetyl-CoA synthetase, at 405479 to 408297 15276 mRNA_6909: 15277 - K14315 NDC1, TMEM48 nucleoporin NDC1, at 408529 to 411391 15277

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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405,288 + -0.2
405,310 + 0.9
405,310 - -0.7
405,319 + -3.4
405,327 - 2.1
405,341 + -0.2
405,355 - -1.6
405,448 - 2.0
405,452 - -0.7
405,486 - -1.2
405,494 + 0.8
405,738 - 1.8
405,739 + -1.8
406,063 - 15276 mRNA_6908 0.21 0.3
406,328 + 15276 mRNA_6908 0.30 1.2
406,418 - 15276 mRNA_6908 0.33 1.0
406,439 - 15276 mRNA_6908 0.34 -0.5
406,765 - 15276 mRNA_6908 0.46 -0.7
406,795 + 15276 mRNA_6908 0.47 2.8
406,911 - 15276 mRNA_6908 0.51 -0.9
407,038 - 15276 mRNA_6908 0.55 -0.6
407,058 + 15276 mRNA_6908 0.56 0.4
407,104 - 15276 mRNA_6908 0.58 -0.6
407,329 - 15276 mRNA_6908 0.66 -1.7
407,372 - 15276 mRNA_6908 0.67 2.5
407,506 - 15276 mRNA_6908 0.72 -0.3
407,514 - 15276 mRNA_6908 0.72 -0.1
407,652 + 15276 mRNA_6908 0.77 -1.5
407,803 + 15276 mRNA_6908 0.82 -0.6
408,090 + 0.7
408,206 + -0.4
408,207 - 0.8
408,217 - 2.8
408,223 + 0.7
408,361 - 0.5
408,365 - -0.7
408,366 - 0.2
408,377 - 1.2
408,412 + 0.2
408,413 - 0.6
408,417 - -0.4
408,420 + -0.1
408,420 - 1.3
408,420 - 1.0
408,421 + -0.0
408,455 - -0.7
408,468 + -0.3
408,484 + 1.3
408,489 - 0.5
408,509 - -0.1
408,835 - 15277 mRNA_6909 0.11 -1.5