Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6699

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6698: 15066 - K00819 rocD, OAT ornithine--oxo-acid transaminase, at 1476138 to 1478780 15066 mRNA_6699: 15067 - HMMPfam-Peptidase family M20/M25/M40-PF01546,HMMPfam-Peptidase dimerisation domain-PF07687,PIRSF--PIRSF037226,SUPERFAMILY--SSF53187,SUPERFAMILY--SSF55031,TIGRFAM-amidohydrolases amidohydrolase-TIGR01891, at 1479159 to 1480660 15067 mRNA_6700: 15068 - HMMPfam-Amidohydrolase family-PF07969,SUPERFAMILY--SSF51338,SUPERFAMILY--SSF51556, at 1481002 to 1482828 15068

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,478,217 + 15066 mRNA_6698 0.79 -0.3
1,478,228 - 15066 mRNA_6698 0.79 -0.8
1,478,235 - 15066 mRNA_6698 0.79 2.1
1,478,370 + 15066 mRNA_6698 0.84 -0.4
1,478,512 + 15066 mRNA_6698 0.90 -0.1
1,478,547 + 0.5
1,478,666 - 1.3
1,478,679 - -0.2
1,478,685 + 0.5
1,478,835 + 0.2
1,478,978 + 0.6
1,479,005 + 0.4
1,479,078 - 1.0
1,479,087 + -1.5
1,479,126 + -2.0
1,479,140 + 0.3
1,479,162 - 0.8
1,479,265 + 0.0
1,479,302 - 0.7
1,479,439 - 15067 mRNA_6699 0.19 0.1
1,479,482 + 15067 mRNA_6699 0.22 -1.7
1,479,560 + 15067 mRNA_6699 0.27 0.1
1,479,561 - 15067 mRNA_6699 0.27 1.1
1,479,727 - 15067 mRNA_6699 0.38 -0.5
1,479,784 - 15067 mRNA_6699 0.42 1.5
1,480,212 + 15067 mRNA_6699 0.70 1.0
1,480,270 - 15067 mRNA_6699 0.74 0.8
1,480,447 - 15067 mRNA_6699 0.86 -1.2
1,480,454 + 15067 mRNA_6699 0.86 -1.4
1,480,763 - 0.6
1,480,884 + 1.8
1,480,885 - 1.0
1,481,291 + 15068 mRNA_6700 0.16 -0.0