Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6648

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6647: 15015 - HMMPfam-Peroxisomal biogenesis factor 11 (PEX11)-PF05648, at 1341651 to 1342937 15015 mRNA_6648: 15016 - BLAST Gluconolactonase [Termitomyces sp. J132], at 1342998 to 1344316 15016 mRNA_6649: 15017 - K12580 CNOT3, NOT3 CCR4-NOT transcription complex subunit 3, at 1344681 to 1347468 15017

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,342,200 - 15015 mRNA_6647 0.43 1.5
1,342,492 - 15015 mRNA_6647 0.65 0.1
1,342,542 + 15015 mRNA_6647 0.69 0.1
1,342,568 + 15015 mRNA_6647 0.71 0.6
1,342,646 + 15015 mRNA_6647 0.77 2.0
1,342,649 - 15015 mRNA_6647 0.78 1.0
1,342,671 + 15015 mRNA_6647 0.79 0.0
1,342,678 + 15015 mRNA_6647 0.80 0.1
1,342,692 - 15015 mRNA_6647 0.81 0.7
1,342,798 - 15015 mRNA_6647 0.89 1.5
1,342,961 - 0.8
1,342,962 - 2.9
1,342,963 + -0.5
1,342,975 + 2.2
1,343,120 - 0.2
1,343,121 + -0.0
1,343,140 - 15016 mRNA_6648 0.11 1.0
1,343,271 - 15016 mRNA_6648 0.21 1.7
1,343,290 + 15016 mRNA_6648 0.22 0.7
1,343,430 + 15016 mRNA_6648 0.33 1.6
1,344,131 - 15016 mRNA_6648 0.86 0.4
1,344,434 - 1.1
1,344,440 - -1.8
1,344,442 - -0.4
1,344,573 - 1.7
1,344,574 + 0.8
1,344,576 - 0.2
1,345,170 - 15017 mRNA_6649 0.18 0.2