Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6647

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6646: 15014 - K14647 vpr minor extracellular serine protease Vpr, at 1337672 to 1341391 15014 mRNA_6647: 15015 - HMMPfam-Peroxisomal biogenesis factor 11 (PEX11)-PF05648, at 1341651 to 1342937 15015 mRNA_6648: 15016 - BLAST Gluconolactonase [Termitomyces sp. J132], at 1342998 to 1344316 15016

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,340,700 - 15014 mRNA_6646 0.81 -0.0
1,340,708 + 15014 mRNA_6646 0.82 1.9
1,341,045 - -0.6
1,341,216 + 1.1
1,341,343 - -0.6
1,341,354 + -0.2
1,341,489 + 0.5
1,341,491 + 0.4
1,341,502 + 0.0
1,341,528 - -0.4
1,341,530 - 0.6
1,341,559 - 2.2
1,341,583 + 0.5
1,341,611 - -0.6
1,341,616 + 0.7
1,341,618 + -1.1
1,341,655 - -0.0
1,341,763 + -0.2
1,341,785 - 15015 mRNA_6647 0.10 0.9
1,341,819 - 15015 mRNA_6647 0.13 0.5
1,341,934 + 15015 mRNA_6647 0.22 0.3
1,342,200 - 15015 mRNA_6647 0.43 1.5
1,342,492 - 15015 mRNA_6647 0.65 0.1
1,342,542 + 15015 mRNA_6647 0.69 0.1
1,342,568 + 15015 mRNA_6647 0.71 0.6
1,342,646 + 15015 mRNA_6647 0.77 2.0
1,342,649 - 15015 mRNA_6647 0.78 1.0
1,342,671 + 15015 mRNA_6647 0.79 0.0
1,342,678 + 15015 mRNA_6647 0.80 0.1
1,342,692 - 15015 mRNA_6647 0.81 0.7
1,342,798 - 15015 mRNA_6647 0.89 1.5
1,342,961 - 0.8
1,342,962 - 2.9
1,342,963 + -0.5
1,342,975 + 2.2
1,343,120 - 0.2
1,343,121 + -0.0
1,343,140 - 15016 mRNA_6648 0.11 1.0
1,343,271 - 15016 mRNA_6648 0.21 1.7
1,343,290 + 15016 mRNA_6648 0.22 0.7
1,343,430 + 15016 mRNA_6648 0.33 1.6