Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6557

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6556: 14924 - K14793 RRP9 ribosomal RNA-processing protein 9, at 1086461 to 1088538 14924 mRNA_6557: 14925 - K13566 NIT2 omega-amidase, at 1088789 to 1090275 14925 mRNA_6558: 14926 - HMMPfam-Bacterial signalling protein N terminal repeat-PF03707, at 1090620 to 1093721 14926

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,088,605 + -2.0
1,088,611 - 1.6
1,088,871 - -1.1
1,088,893 - -0.8
1,088,893 + -0.1
1,088,895 + -0.3
1,088,896 - -0.3
1,088,922 + 1.1
1,088,922 + -0.9
1,088,923 - 1.6
1,089,034 - 14925 mRNA_6557 0.16 -0.6
1,089,188 - 14925 mRNA_6557 0.27 1.4
1,089,473 + 14925 mRNA_6557 0.46 1.9
1,089,638 - 14925 mRNA_6557 0.57 0.1
1,089,638 - 14925 mRNA_6557 0.57 0.2
1,089,873 - 14925 mRNA_6557 0.73 -0.0
1,089,929 - 14925 mRNA_6557 0.77 -0.3
1,089,937 + 14925 mRNA_6557 0.77 0.4
1,090,068 + 14925 mRNA_6557 0.86 0.4
1,090,077 + 14925 mRNA_6557 0.87 -0.6
1,090,080 - 14925 mRNA_6557 0.87 0.1
1,090,092 - 14925 mRNA_6557 0.88 -1.4
1,090,094 + 14925 mRNA_6557 0.88 -0.2
1,090,201 + 0.8
1,090,230 - 0.4
1,090,367 - -0.2
1,090,368 - 0.0
1,090,376 - 1.7
1,090,393 - -0.1
1,090,406 - 0.2
1,090,519 + 0.3
1,090,533 + 0.0
1,090,673 + -0.2
1,090,795 - 0.6
1,090,838 - -0.3
1,090,970 - 14926 mRNA_6558 0.11 -0.2
1,091,112 + 14926 mRNA_6558 0.16 1.0
1,091,201 - 14926 mRNA_6558 0.19 1.5
1,091,233 + 14926 mRNA_6558 0.20 0.0