Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6487

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6486: 14854 - K08294 MKK1_2 mitogen-activated protein kinase kinase, at 900253 to 901810 14854 mRNA_6487: 14855 - K11237 BEM1 bud emergence protein 1, at 902586 to 904816 14855 mRNA_6488: 14856 - K01655 LYS21, LYS20 homocitrate synthase, at 905172 to 907549 14856

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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901,588 + 14854 mRNA_6486 0.86 -0.4
901,936 - -1.5
901,961 - -0.2
901,962 + -2.4
901,963 - 0.9
901,967 + 0.7
901,986 + 0.4
901,989 + 2.7
901,997 - 1.2
902,020 + 0.0
902,095 - 0.5
902,104 + 0.7
902,129 - -0.1
902,134 + 1.5
902,143 - 0.3
902,157 + 0.7
902,161 + -0.4
902,178 - 0.8
902,252 - 0.4
902,279 - -0.9
902,291 + 0.4
902,298 - -1.3
902,308 + -0.3
902,364 - -0.9
902,364 + -0.6
902,415 + 0.1
902,428 - 0.5
902,572 - -0.7
902,579 - 1.7
902,594 - 0.6
902,643 + 1.4
902,884 + 14855 mRNA_6487 0.13 0.9
903,001 - 14855 mRNA_6487 0.19 0.1
903,062 + 14855 mRNA_6487 0.21 0.4
903,265 + 14855 mRNA_6487 0.30 0.6
903,743 + 14855 mRNA_6487 0.52 1.1
903,866 + 14855 mRNA_6487 0.57 0.1
903,893 - 14855 mRNA_6487 0.59 -0.2
903,981 - 14855 mRNA_6487 0.63 2.9
904,618 + -0.1
904,857 - 0.3
904,883 - 1.4
904,883 - -2.4
904,897 - -0.1
904,899 + 1.7
904,899 - 1.8
904,922 - 0.2
904,923 + 0.4
904,994 + 0.0
904,998 - -0.4
905,047 - 1.6
905,050 + 1.0
905,059 + -0.8
905,073 - 0.8
905,075 - 1.9
905,089 - -1.8
905,091 - -1.5
905,092 + 0.0
905,093 + 0.4
905,110 - -2.1
905,408 - -3.5
905,562 + 14856 mRNA_6488 0.16 -1.9