Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6389

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6388: 14756 - HMMPfam-BRCA1 C Terminus (BRCT) domain-PF00533,ProSiteProfiles-BRCT domain profile.-PS50172,SUPERFAMILY--SSF52113, at 693931 to 695622 14756 mRNA_6389: 14757 - HMMPfam-Protein kinase domain-PF00069,ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSitePatterns-Serine/Threonine protein kinases active-site signature.-PS00108,ProSiteProfiles-Protein kinase domain profile.-PS50011,SMART-Serine/Threonine protein kinases, catalytic domain-SM00220,SUPERFAMILY--SSF56112, at 695999 to 699737 14757 mRNA_6390: 14758 - KOG0605 NDR and related serine/threonine kinases, at 700093 to 702768 14758

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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695,746 - 2.5
695,808 - -0.4
695,910 + 0.3
695,918 - 2.7
696,012 - 0.5
696,369 - -0.5
696,685 + 14757 mRNA_6389 0.18 0.7
696,769 + 14757 mRNA_6389 0.21 1.4
696,798 - 14757 mRNA_6389 0.21 0.7
696,823 + 14757 mRNA_6389 0.22 2.1
696,838 + 14757 mRNA_6389 0.22 0.1
697,052 - 14757 mRNA_6389 0.28 0.3
697,065 - 14757 mRNA_6389 0.29 1.1
697,100 + 14757 mRNA_6389 0.29 1.7
697,503 + 14757 mRNA_6389 0.40 -0.7
698,132 + 14757 mRNA_6389 0.57 0.6
698,304 + 14757 mRNA_6389 0.62 -0.4
698,324 - 14757 mRNA_6389 0.62 0.2
698,395 + 14757 mRNA_6389 0.64 1.2
698,737 + 14757 mRNA_6389 0.73 0.9
698,847 - 14757 mRNA_6389 0.76 -0.1
699,083 + 14757 mRNA_6389 0.82 1.1
699,198 - 14757 mRNA_6389 0.86 2.0
699,451 + 2.0
699,506 + 0.0
699,517 + -0.7
699,523 - 0.1
699,604 + 1.3
699,619 - -0.6
699,620 + -0.1
700,055 - 0.3
700,203 + 0.4
700,263 + -0.3
700,481 + 14758 mRNA_6390 0.14 0.6
700,506 - 14758 mRNA_6390 0.15 0.3
700,653 - 14758 mRNA_6390 0.21 1.2