Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5953

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5952: 14320 - K15198 BDP1, TFC5 transcription factor TFIIIB component B'', at 1313767 to 1316568 14320 mRNA_5953: 14321 - KOG2084 Predicted histone tail methylase containing SET domain, at 1316839 to 1317817 14321 mRNA_5954: 14322 - HMMPfam-Domain of unknown function (DUF2427)-PF10348,ProSiteProfiles-Cytochrome b561 domain profile.-PS50939,SMART-Cytochrome b-561 / ferric reductase transmembrane domain.-SM00665, at 1317942 to 1318810 14322

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,316,622 + 0.5
1,316,622 + -0.5
1,316,642 - -0.4
1,316,727 - -0.1
1,316,789 + 0.7
1,316,798 + -0.3
1,316,803 - 0.0
1,317,174 - 14321 mRNA_5953 0.34 -0.8
1,317,245 + 14321 mRNA_5953 0.41 0.4
1,317,335 + 14321 mRNA_5953 0.51 0.2
1,317,418 - 14321 mRNA_5953 0.59 -1.9
1,317,528 - 14321 mRNA_5953 0.70 -0.3
1,317,577 - 14321 mRNA_5953 0.75 0.2
1,317,939 - -0.3
1,317,939 - 0.9
1,317,957 - -0.8
1,317,964 - -0.3
1,318,003 - 1.4
1,318,020 - -1.4
1,318,022 + 0.4
1,318,087 - 14322 mRNA_5954 0.17 -0.0
1,318,100 + 14322 mRNA_5954 0.18 -0.3
1,318,104 - 14322 mRNA_5954 0.19 -1.2
1,318,129 - 14322 mRNA_5954 0.22 1.0
1,318,412 - 14322 mRNA_5954 0.54 0.3
1,318,426 + 14322 mRNA_5954 0.56 -0.6
1,318,612 + 14322 mRNA_5954 0.77 -2.4
1,318,646 + 14322 mRNA_5954 0.81 1.4
1,318,689 + 14322 mRNA_5954 0.86 0.5