Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5581

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5580: 13948 - K00162 PDHB, pdhB pyruvate dehydrogenase E1 component beta subunit, at 424310 to 425729 13948 mRNA_5581: 13949 - KOG1198 Zinc-binding oxidoreductase, at 426490 to 430753 13949 mRNA_5582: 13950 - KOG0254 Predicted transporter (major facilitator superfamily), at 431120 to 432974 13950

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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425,746 + 1.9
425,965 + -0.4
425,976 + 0.5
425,989 + 0.9
426,023 - 0.5
426,063 + 0.4
426,089 + 0.6
426,092 - -0.6
426,101 + -0.7
426,108 - 0.6
426,117 - -0.3
426,117 - -0.2
426,117 + 2.1
426,120 - -1.8
426,126 - 1.2
426,129 - -0.4
426,133 + -1.8
426,141 - 0.8
426,142 - 1.1
426,146 + 0.4
426,147 - 0.5
426,150 + 3.1
426,150 - 0.0
426,156 + -0.6
426,157 - 0.9
426,161 - 0.2
426,163 + 0.4
426,166 + 0.2
426,171 - -1.0
426,177 + -0.4
426,200 + -1.2
426,305 - -0.3
426,313 - 0.6
426,331 + 0.4
426,352 + -0.4
426,465 - -1.2
426,491 + 1.3
426,494 - 0.2
426,619 + 1.3
426,646 - -0.6
426,893 + 1.0
427,045 - 13949 mRNA_5581 0.13 1.8
427,202 + 13949 mRNA_5581 0.17 2.6
427,507 + 13949 mRNA_5581 0.24 0.8
427,859 + 13949 mRNA_5581 0.32 1.7
428,081 + 13949 mRNA_5581 0.37 -0.2
428,846 - 13949 mRNA_5581 0.55 0.4
428,853 + 13949 mRNA_5581 0.55 -0.0
428,926 - 13949 mRNA_5581 0.57 0.8
429,055 - 13949 mRNA_5581 0.60 2.4
430,334 - 0.3
430,820 + -0.5
430,983 - 0.4
431,582 - 13950 mRNA_5582 0.25 0.4