Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5577

Experiments: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5576: 13944 - Interpro GDP-fucose protein O-fucosyltransferase, at 415685 to 417537 13944 mRNA_5577: 13945 - Hypothetical Protein, at 418154 to 419235 13945 mRNA_5578: 13946 - HMMPfam-HMG (high mobility group) box-PF00505,ProSiteProfiles-HMG boxes A and B DNA-binding domains profile.-PS50118,SMART-high mobility group-SM00398,SUPERFAMILY--SSF47095, at 419632 to 421061 13946

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
417,566 - 0.1
417,972 - 0.7
418,407 - 13945 mRNA_5577 0.23 -0.5
418,835 - 13945 mRNA_5577 0.63 0.6
418,836 - 13945 mRNA_5577 0.63 0.8
418,967 - 13945 mRNA_5577 0.75 2.8
419,001 - 13945 mRNA_5577 0.78 0.7
419,140 - 0.7
419,140 - 0.7
419,258 - 0.3
419,273 + -0.6
419,404 - 0.4
419,415 + 0.3
419,416 + -1.6
419,420 - 1.2
419,435 + 0.1
419,437 + 2.5
419,449 - -0.6
419,519 - 0.9
419,542 - 1.0
419,542 - 0.7
419,548 - 0.9
419,549 + 1.5
419,550 + 1.2
419,555 - 0.3
419,558 + 0.9
419,558 + 0.3
419,559 - 1.7
419,561 + 2.9
419,565 + 0.9
419,568 + 0.6
419,568 + -0.3
419,570 - 0.5
419,571 - 2.0
419,572 - -3.7
419,572 + 0.8
419,575 - -1.0
419,581 + 0.5
419,588 + -0.3
419,590 + 0.1
419,590 - 0.2
419,591 + 0.2
419,595 + 0.1
419,596 + 1.3
419,605 + 0.5