Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5572

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5571: 13939 - K14546 UTP5, WDR43 U3 small nucleolar RNA-associated protein 5, at 402481 to 405282 13939 mRNA_5572: 13940 - K18730 GIGYF PERQ amino acid-rich with GYF domain-containing protein, at 405680 to 409565 13940 mRNA_5573: 13941 - BLAST Protein priA [Hypsizygus marmoreus], at 409933 to 411114 13941

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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405,223 + 0.2
405,246 + -1.0
405,340 + 0.7
405,357 - -0.7
405,363 + 1.5
405,368 + -0.9
405,491 + -0.2
405,505 + 1.8
405,517 + 0.1
405,520 - 1.0
405,522 + 0.7
405,526 - -0.8
405,528 + 0.5
405,666 + -0.6
405,763 - -0.3
405,784 - 1.2
405,826 - -0.6
405,838 + 0.0
405,959 + 0.1
405,961 + -0.1
406,097 - 13940 mRNA_5572 0.11 1.7
406,243 + 13940 mRNA_5572 0.14 0.7
406,380 - 13940 mRNA_5572 0.18 0.5
406,956 - 13940 mRNA_5572 0.33 0.2
407,115 + 13940 mRNA_5572 0.37 0.3
407,375 - 13940 mRNA_5572 0.44 -0.4
407,389 - 13940 mRNA_5572 0.44 1.4
407,465 + 13940 mRNA_5572 0.46 -3.1
407,962 - 13940 mRNA_5572 0.59 -1.8
408,002 + 13940 mRNA_5572 0.60 1.5
409,527 + -1.3
409,575 - -0.3
409,590 + 0.7
409,598 - 0.7
409,614 + 0.7
409,614 + 0.6
409,617 - -0.1
409,624 + 0.6
409,670 - -1.0
409,696 - 0.3
409,717 - 0.3
409,730 + -0.1
409,755 - 2.6
409,834 - 0.2
409,863 - 1.9
409,939 + -0.2
410,023 + 0.8
410,040 + 0.5
410,115 + 13941 mRNA_5573 0.15 -0.2
410,306 + 13941 mRNA_5573 0.32 1.8
410,323 + 13941 mRNA_5573 0.33 0.0
410,562 + 13941 mRNA_5573 0.53 -0.7