Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5564

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5563: 13931 - K10756 RFC3_5 replication factor C subunit 3/5, at 385624 to 387371 13931 mRNA_5564: 13932 - HMMPfam-Phytanoyl-CoA dioxygenase (PhyH)-PF05721,SUPERFAMILY--SSF51197, at 387473 to 390458 13932

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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387,517 + 1.4
387,517 - 0.9
387,622 + 1.6
387,951 - 13932 mRNA_5564 0.16 -0.2
388,072 - 13932 mRNA_5564 0.20 0.5
388,402 - 13932 mRNA_5564 0.31 -0.3
388,457 + 13932 mRNA_5564 0.33 0.2
388,476 - 13932 mRNA_5564 0.34 -0.4
388,622 + 13932 mRNA_5564 0.38 -0.2
388,809 - 13932 mRNA_5564 0.45 -1.6
388,856 + 13932 mRNA_5564 0.46 0.9
388,937 - 13932 mRNA_5564 0.49 0.5
389,009 + 13932 mRNA_5564 0.51 1.3
389,301 + 13932 mRNA_5564 0.61 0.2
389,550 - 13932 mRNA_5564 0.70 0.1
389,606 - 13932 mRNA_5564 0.71 2.6
389,824 + 13932 mRNA_5564 0.79 0.2
389,873 + 13932 mRNA_5564 0.80 -0.1
390,281 - 0.1
390,607 - 1.0
390,768 - 0.9
391,031 + 1.2
391,042 - 1.5
391,195 + 0.2
391,195 + -1.5
391,305 + 0.2
391,306 + -0.5
391,319 - 0.4
391,326 + 0.0
391,328 - 1.8
391,343 - -0.1
391,381 - 0.1
391,401 + -0.5
391,401 + 0.2
391,419 - -1.0
391,420 - 0.8
391,438 + 0.5
391,447 - -0.0
391,454 - 0.5
391,454 - -0.3