Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5394

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5394: 13762 - SUPERFAMILY--SSF54897, at 121 to 1074 13762 mRNA_5395: 13763 - KOG4551 GPI-GlcNAc transferase complex, PIG-H component, involved in glycosylphosphatidylinositol anchor biosynthesis, at 1148 to 1997 13763

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1 + -2.4
1 + 0.4
1 + 2.0
1 + -0.6
23 + -2.6
29 + 0.4
29 + 0.6
34 + -3.4
39 + 0.9
39 + 0.1
47 + 1.3
50 + -0.2
50 + -1.9
50 + -0.5
50 + 0.7
50 - -0.1
51 + 1.3
61 + 2.5
62 + -0.6
96 + 1.6
116 + 0.3
158 - -0.2
159 - -0.2
160 - 1.3
169 - 0.3
180 - 0.7
189 + -0.9
198 + -0.7
201 - 0.5
208 - -0.7
210 + 1.5
225 + 13762 mRNA_5394 0.11 -0.3
225 + 13762 mRNA_5394 0.11 0.2
244 + 13762 mRNA_5394 0.13 -3.0
245 - 13762 mRNA_5394 0.13 0.9
271 - 13762 mRNA_5394 0.16 0.8
276 - 13762 mRNA_5394 0.16 -1.4
277 + 13762 mRNA_5394 0.16 -0.2
280 - 13762 mRNA_5394 0.17 -0.4
306 + 13762 mRNA_5394 0.19 0.3
317 - 13762 mRNA_5394 0.21 -0.3
345 + 13762 mRNA_5394 0.23 -0.3
345 - 13762 mRNA_5394 0.23 -2.7
347 + 13762 mRNA_5394 0.24 0.4
359 - 13762 mRNA_5394 0.25 -2.3
387 - 13762 mRNA_5394 0.28 0.7
399 + 13762 mRNA_5394 0.29 1.2
434 + 13762 mRNA_5394 0.33 1.2
447 - 13762 mRNA_5394 0.34 0.7
485 - 13762 mRNA_5394 0.38 0.2
543 + 13762 mRNA_5394 0.44 -0.1
649 + 13762 mRNA_5394 0.55 1.5
667 + 13762 mRNA_5394 0.57 -1.5
667 - 13762 mRNA_5394 0.57 1.8
678 - 13762 mRNA_5394 0.58 -0.8
718 + 13762 mRNA_5394 0.63 -1.4
723 + 13762 mRNA_5394 0.63 1.9
802 + 13762 mRNA_5394 0.71 0.5
806 + 13762 mRNA_5394 0.72 0.4
905 - 13762 mRNA_5394 0.82 -0.2
911 + 13762 mRNA_5394 0.83 2.3
965 + 13762 mRNA_5394 0.88 0.0
966 + 13762 mRNA_5394 0.89 1.5
968 + 13762 mRNA_5394 0.89 -0.4
1,014 - 0.3
1,084 - -1.4
1,103 - 0.3
1,110 + 0.5
1,245 - 13763 mRNA_5395 0.11 -2.9
1,260 - 13763 mRNA_5395 0.13 0.1
1,376 - 13763 mRNA_5395 0.27 0.0
1,438 + 13763 mRNA_5395 0.34 -0.8
1,438 + 13763 mRNA_5395 0.34 1.2
1,438 + 13763 mRNA_5395 0.34 0.2
1,523 + 13763 mRNA_5395 0.44 0.4
1,528 - 13763 mRNA_5395 0.45 0.7
1,533 + 13763 mRNA_5395 0.45 0.8
1,538 + 13763 mRNA_5395 0.46 -1.3
1,538 - 13763 mRNA_5395 0.46 0.0
1,556 + 13763 mRNA_5395 0.48 -1.5
1,639 + 13763 mRNA_5395 0.58 0.8
1,854 - 13763 mRNA_5395 0.83 1.8
1,855 - 13763 mRNA_5395 0.83 1.0
1,887 - 13763 mRNA_5395 0.87 -0.3
1,908 - 13763 mRNA_5395 0.89 -1.0
2,000 - -0.9
2,009 + 1.3