Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5290

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5289: 13657 - K00344 qor, CRYZ NADPH2-quinone reductase, at 363937 to 365504 13657 mRNA_5290: 13658 - HMMPfam-ARID/BRIGHT DNA binding domain-PF01388,ProSiteProfiles-ARID domain profile.-PS51011,SMART-BRIGHT, ARID (A/T-rich interaction domain) domain-SM00501,SMART-ARID/BRIGHT DNA binding domain-SM01014,SUPERFAMILY--SSF46774, at 365926 to 369880 13658 mRNA_5291: 13659 - K00799 GST, gst glutathione S-transferase, at 370278 to 371436 13659

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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364,965 - 13657 mRNA_5289 0.66 -0.4
365,130 + 13657 mRNA_5289 0.76 1.3
365,141 - 13657 mRNA_5289 0.77 0.7
365,286 - 13657 mRNA_5289 0.86 0.2
365,368 - 0.4
365,385 + -0.2
365,404 - 0.4
365,474 - 1.1
365,710 - 0.2
365,714 + -0.1
365,733 + 1.9
365,865 + 0.6
365,890 - -0.1
365,936 - 1.1
365,976 + -0.3
366,004 + -0.9
366,146 - -1.1
366,151 + 1.7
366,159 - -0.7
366,168 + -0.2
366,172 + 0.6
366,351 + 13658 mRNA_5290 0.11 -1.5
366,989 + 13658 mRNA_5290 0.27 -0.8
367,083 + 13658 mRNA_5290 0.29 2.9
367,154 - 13658 mRNA_5290 0.31 0.3
367,251 + 13658 mRNA_5290 0.34 1.1
367,326 + 13658 mRNA_5290 0.35 0.1
367,681 - 13658 mRNA_5290 0.44 0.6
367,719 + 13658 mRNA_5290 0.45 -0.2
367,728 + 13658 mRNA_5290 0.46 -0.9
367,818 + 13658 mRNA_5290 0.48 -0.3
368,441 + 13658 mRNA_5290 0.64 1.1
368,600 + 13658 mRNA_5290 0.68 0.9
368,997 + 13658 mRNA_5290 0.78 0.3
369,132 - 13658 mRNA_5290 0.81 0.1
369,165 + 13658 mRNA_5290 0.82 2.3
369,547 - 1.0
369,581 - 0.4
369,591 + 1.2
369,694 - 0.3
369,730 + 1.3
369,743 - -0.4
369,743 + 0.2
369,873 + 0.4
369,885 - 0.5
369,900 + -0.2
369,902 - -2.4
370,012 - -0.9
370,020 - 0.8
370,020 - 1.4
370,021 - 0.1
370,033 + 0.3
370,036 + 0.2
370,039 - 0.0
370,039 - -0.3
370,043 + -0.1
370,070 - -0.0
370,091 - 0.2
370,095 + -1.5
370,097 + -0.4
370,202 + 1.3
370,489 - 13659 mRNA_5291 0.18 2.3
370,521 + 13659 mRNA_5291 0.21 0.6
370,738 - 13659 mRNA_5291 0.40 0.1
370,786 - 13659 mRNA_5291 0.44 0.7