Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5140

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5139: 13507 - KOG1944 Peroxisomal membrane protein MPV17 and related proteins, at 1845271 to 1846302 13507 mRNA_5140: 13508 - HMMPfam-GDSL-like Lipase/Acylhydrolase-PF00657,SUPERFAMILY--SSF52266, at 1846585 to 1847965 13508

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,845,746 - 13507 mRNA_5139 0.46 0.8
1,846,024 - 13507 mRNA_5139 0.73 0.7
1,846,137 + 13507 mRNA_5139 0.84 1.2
1,846,140 - 13507 mRNA_5139 0.84 0.7
1,846,263 + 2.5
1,846,300 + -1.1
1,846,300 - 2.4
1,846,303 + 0.8
1,846,336 - 0.5
1,846,417 + 0.2
1,846,427 + 0.8
1,846,436 - 0.4
1,846,438 - 0.7
1,846,444 + 0.7
1,846,456 - -0.6
1,846,461 + -0.8
1,846,462 + 0.6
1,846,465 + -0.6
1,846,469 - 0.7
1,846,470 - -0.0
1,846,472 + 3.0
1,846,477 - 0.2
1,846,482 + 0.9
1,846,482 + 0.5
1,846,484 - 1.6
1,846,495 - -0.0
1,846,504 - -0.3
1,846,511 + 0.6
1,846,519 + 0.0
1,846,538 + -0.0
1,846,554 - 0.7
1,846,644 - -0.6
1,846,648 - 1.5
1,846,648 - -0.5
1,846,649 - 1.1
1,846,649 - 0.1
1,846,655 + 0.2
1,846,658 + 0.4
1,846,660 + 0.7
1,846,663 + -1.4
1,846,669 + -0.4
1,846,797 - 13508 mRNA_5140 0.15 2.6
1,846,797 - 13508 mRNA_5140 0.15 -2.2
1,846,940 + 13508 mRNA_5140 0.26 -2.1
1,847,086 - 13508 mRNA_5140 0.36 0.5
1,847,146 + 13508 mRNA_5140 0.41 0.1
1,847,245 - 13508 mRNA_5140 0.48 1.0
1,847,249 + 13508 mRNA_5140 0.48 -0.5
1,847,393 - 13508 mRNA_5140 0.59 0.2
1,847,511 - 13508 mRNA_5140 0.67 -0.1
1,847,664 - 13508 mRNA_5140 0.78 0.1
1,847,728 + 13508 mRNA_5140 0.83 1.2
1,847,961 - 0.7
1,847,979 - 0.4
1,848,113 - 1.7