Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5018

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5017: 13385 - K08963 mtnA methylthioribose-1-phosphate isomerase, at 1557007 to 1558590 13385 mRNA_5018: 13386 - Hypothetical Protein, at 1558748 to 1560542 13386 mRNA_5019: 13387 - HMMPfam-Basic region leucine zipper-PF07716,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1560613 to 1563320 13387

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,558,015 - 13385 mRNA_5017 0.64 -0.3
1,558,020 + 13385 mRNA_5017 0.64 0.9
1,558,591 + 0.1
1,559,316 + 13386 mRNA_5018 0.32 -0.9
1,559,447 - 13386 mRNA_5018 0.39 -0.8
1,559,674 - 13386 mRNA_5018 0.52 1.8
1,559,882 + 13386 mRNA_5018 0.63 0.5
1,560,045 + 13386 mRNA_5018 0.72 -0.3
1,560,049 + 13386 mRNA_5018 0.72 -0.3
1,560,318 - 13386 mRNA_5018 0.87 0.1
1,560,326 - 13386 mRNA_5018 0.88 0.6
1,560,331 + 13386 mRNA_5018 0.88 1.0
1,560,346 + 13386 mRNA_5018 0.89 -1.5
1,560,425 + 0.2
1,560,459 - 0.9
1,560,460 - -0.2
1,560,460 + -3.7
1,560,461 + 1.5
1,560,465 + 1.0
1,560,467 - 0.6
1,560,470 - -0.5
1,560,474 - 0.2
1,560,478 - 0.7
1,560,479 - -0.8
1,560,480 + 0.5
1,560,481 + 1.7
1,560,481 + -0.5
1,560,482 - 0.7
1,560,486 + 0.5
1,560,489 - -0.3
1,560,491 - 0.1
1,560,494 + -0.1
1,560,495 - 1.1
1,560,496 + -1.3
1,560,498 + 0.5
1,560,499 + 0.5
1,560,500 - -0.9
1,560,503 + 0.1
1,560,518 + 0.9
1,560,518 + 0.1
1,560,635 - 1.6
1,560,639 + 1.3
1,560,647 + -0.1
1,560,658 + 0.8
1,560,669 + 0.1
1,560,669 - 1.0
1,560,798 + 0.4
1,560,801 - -0.0
1,560,925 - 13387 mRNA_5019 0.12 0.5
1,560,928 + 13387 mRNA_5019 0.12 -0.2
1,560,939 + 13387 mRNA_5019 0.12 0.4
1,560,940 + 13387 mRNA_5019 0.12 1.5
1,560,956 - 13387 mRNA_5019 0.13 0.5
1,560,963 - 13387 mRNA_5019 0.13 1.0
1,560,979 - 13387 mRNA_5019 0.14 1.3
1,561,014 - 13387 mRNA_5019 0.15 0.8
1,561,096 - 13387 mRNA_5019 0.18 0.4
1,561,105 + 13387 mRNA_5019 0.18 0.6
1,561,118 + 13387 mRNA_5019 0.19 -1.5
1,561,124 - 13387 mRNA_5019 0.19 0.9
1,561,248 - 13387 mRNA_5019 0.23 -0.4
1,561,285 - 13387 mRNA_5019 0.25 -0.6
1,561,380 + 13387 mRNA_5019 0.28 -0.1
1,561,394 + 13387 mRNA_5019 0.29 0.4
1,561,396 + 13387 mRNA_5019 0.29 0.2
1,561,411 - 13387 mRNA_5019 0.29 2.4
1,561,540 - 13387 mRNA_5019 0.34 0.4