Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4986

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4985: 13353 - BLAST vps9 domain protein [Zymoseptoria brevis], at 1477424 to 1478250 13353 mRNA_4986: 13354 - K17943 PUM pumilio RNA-binding family, at 1478894 to 1482308 13354 mRNA_4987: 13355 - Hypothetical Protein, at 1482812 to 1483516 13355

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,478,095 - 13353 mRNA_4985 0.81 -0.1
1,478,185 + 0.7
1,478,219 + 1.2
1,478,384 + -0.6
1,478,820 + 0.8
1,479,043 + 0.1
1,479,118 - 0.5
1,480,324 + 13354 mRNA_4986 0.42 -0.4
1,480,734 - 13354 mRNA_4986 0.54 -0.0
1,480,776 - 13354 mRNA_4986 0.55 -0.0
1,480,778 + 13354 mRNA_4986 0.55 -0.8
1,480,867 + 13354 mRNA_4986 0.58 -0.3
1,481,640 - 13354 mRNA_4986 0.80 -2.8
1,481,774 + 13354 mRNA_4986 0.84 1.4
1,481,880 - 13354 mRNA_4986 0.87 -0.1
1,482,071 - 0.4
1,482,205 - 1.6
1,482,207 + -1.9
1,482,234 - 0.0
1,482,366 + 0.2
1,482,393 + 0.9
1,482,496 - 0.8
1,482,497 + 1.9
1,482,549 - 0.4
1,482,551 - 0.1
1,482,691 + -0.1
1,482,785 + 0.0
1,482,801 - 0.7
1,482,803 + 1.4
1,482,807 + -0.3
1,482,821 + 0.0
1,482,948 + 13355 mRNA_4987 0.19 0.7
1,482,969 + 13355 mRNA_4987 0.22 -1.2
1,482,969 + 13355 mRNA_4987 0.22 -0.2
1,483,004 + 13355 mRNA_4987 0.27 0.7
1,483,114 + 13355 mRNA_4987 0.43 -0.5
1,483,116 - 13355 mRNA_4987 0.43 0.1
1,483,117 + 13355 mRNA_4987 0.43 -1.0
1,483,122 - 13355 mRNA_4987 0.44 1.6
1,483,127 + 13355 mRNA_4987 0.45 -0.3
1,483,131 + 13355 mRNA_4987 0.45 0.0
1,483,132 + 13355 mRNA_4987 0.45 0.6
1,483,142 + 13355 mRNA_4987 0.47 -0.1
1,483,146 + 13355 mRNA_4987 0.47 0.1
1,483,155 - 13355 mRNA_4987 0.49 0.6
1,483,162 - 13355 mRNA_4987 0.50 1.3
1,483,194 - 13355 mRNA_4987 0.54 -1.3
1,483,197 - 13355 mRNA_4987 0.55 1.4
1,483,259 + 13355 mRNA_4987 0.63 0.6