Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4904

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4902: 13270 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 1263087 to 1265892 13270 mRNA_4903: 13271 - BLAST topoisomerase i [Xanthophyllomyces dendrorhous], at 1266011 to 1266275 13271 mRNA_4904: 13272 - K00367 narB ferredoxin-nitrate reductase, at 1266419 to 1270865 13272 mRNA_4905: 13273 - KOG2371 Molybdopterin biosynthesis protein, at 1271158 to 1273410 13273

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,265,512 + 13270 mRNA_4902 0.86 1.0
1,265,513 + 13270 mRNA_4902 0.86 -0.3
1,265,636 - -0.5
1,265,653 - 0.6
1,265,658 - 1.6
1,265,913 - 1.6
1,266,410 - 0.5
1,266,508 + -0.2
1,266,549 + 1.9
1,266,656 - -2.2
1,266,665 - 0.6
1,266,677 - 0.1
1,267,024 + 13272 mRNA_4904 0.14 -1.2
1,267,117 + 13272 mRNA_4904 0.16 1.1
1,267,118 - 13272 mRNA_4904 0.16 0.7
1,267,124 + 13272 mRNA_4904 0.16 -0.2
1,267,127 - 13272 mRNA_4904 0.16 -0.1
1,267,217 + 13272 mRNA_4904 0.18 -0.2
1,267,267 - 13272 mRNA_4904 0.19 -0.9
1,267,324 - 13272 mRNA_4904 0.20 -0.1
1,267,387 - 13272 mRNA_4904 0.22 2.0
1,267,679 - 13272 mRNA_4904 0.28 1.4
1,267,865 + 13272 mRNA_4904 0.33 0.5
1,267,888 + 13272 mRNA_4904 0.33 -0.3
1,267,989 + 13272 mRNA_4904 0.35 0.4
1,267,992 - 13272 mRNA_4904 0.35 1.3
1,267,993 + 13272 mRNA_4904 0.35 -0.1
1,268,112 + 13272 mRNA_4904 0.38 0.4
1,268,145 + 13272 mRNA_4904 0.39 0.2
1,268,181 - 13272 mRNA_4904 0.40 0.1
1,268,475 - 13272 mRNA_4904 0.46 -0.1
1,268,571 - 13272 mRNA_4904 0.48 -0.0
1,268,717 + 13272 mRNA_4904 0.52 0.7
1,268,892 + 13272 mRNA_4904 0.56 -0.2
1,269,028 - 13272 mRNA_4904 0.59 0.2
1,269,582 - 13272 mRNA_4904 0.71 1.7
1,269,715 - 13272 mRNA_4904 0.74 -0.5
1,269,792 - 13272 mRNA_4904 0.76 -0.3
1,269,913 - 13272 mRNA_4904 0.79 0.5
1,270,208 + 13272 mRNA_4904 0.85 -1.4
1,270,467 - 1.1
1,270,752 - 0.2
1,270,761 - -1.7
1,270,769 + 0.1
1,270,871 - -0.1
1,270,939 - 0.4
1,270,957 + 0.5
1,270,961 - 1.1
1,270,961 + 0.0
1,270,971 - -0.8
1,270,981 + 1.7
1,271,024 + 0.4
1,271,028 + -0.1
1,271,038 + -0.0
1,271,075 + 0.4
1,271,085 - 2.5
1,271,202 + 2.2
1,271,215 - -0.3
1,271,782 + 13273 mRNA_4905 0.28 0.1
1,271,806 - 13273 mRNA_4905 0.29 0.2
1,271,839 + 13273 mRNA_4905 0.30 0.2