Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4731

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4730: 13098 - K06062 PCAF, KAT2, GCN5 histone acetyltransferase, at 874263 to 876540 13098 mRNA_4731: 13099 - K08770 UBC ubiquitin C, at 876740 to 878353 13099

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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875,928 + 13098 mRNA_4730 0.73 1.0
876,202 + 13098 mRNA_4730 0.85 2.2
876,356 - 0.0
876,517 - 0.7
876,620 + 0.7
876,637 + -0.4
876,643 - 1.2
876,649 - -0.2
876,652 - 0.1
876,656 - -0.4
876,657 + 1.0
876,657 + 2.5
876,665 + 0.1
876,670 + -0.1
876,671 + -1.2
876,677 + 0.3
876,679 - -1.6
876,695 + 1.1
876,698 - -0.1
876,728 - 0.6
876,737 - -0.0
876,757 + -0.8
876,759 - -0.1
876,760 + 1.1
876,769 - -0.3
876,775 - 1.0
876,780 - 0.4
876,793 - -1.7
876,795 - -0.1
876,820 - -0.3
876,836 + 0.5
876,841 - 0.4
876,847 + 1.1
876,851 + -0.1
876,859 - -0.2
876,861 - 0.6
876,869 + -0.1
876,873 + -0.2
876,875 + -0.9
876,891 - 0.7
876,894 + -0.1
876,894 + 1.6
876,897 + 2.9
876,923 + 13099 mRNA_4731 0.11 0.4
876,926 - 13099 mRNA_4731 0.12 -0.6
876,976 - 13099 mRNA_4731 0.15 -0.3
876,985 + 13099 mRNA_4731 0.15 0.3
877,032 - 13099 mRNA_4731 0.18 0.8
877,048 - 13099 mRNA_4731 0.19 0.2
877,063 - 13099 mRNA_4731 0.20 2.0
877,064 - 13099 mRNA_4731 0.20 0.8
877,085 + 13099 mRNA_4731 0.21 -0.5
877,091 + 13099 mRNA_4731 0.22 -0.1
877,227 + 13099 mRNA_4731 0.30 -2.5
877,362 + 13099 mRNA_4731 0.39 -0.2
877,510 - 13099 mRNA_4731 0.48 0.7
877,525 + 13099 mRNA_4731 0.49 -1.2
877,552 + 13099 mRNA_4731 0.50 0.6
877,661 + 13099 mRNA_4731 0.57 -0.7
877,793 - 13099 mRNA_4731 0.65 0.5
877,801 + 13099 mRNA_4731 0.66 -0.2
877,955 + 13099 mRNA_4731 0.75 -0.5
878,214 + 0.5
878,383 + -0.6
878,392 + 0.8
878,399 - 0.3
878,401 - -0.1
878,467 - -0.7
878,497 - -0.0
878,528 - 0.7
878,533 + -1.3
878,549 - -2.3
878,549 - -0.2
878,557 + -0.4
878,585 - -0.3
878,586 + 0.3
878,592 - -0.1
878,600 + -0.8
878,674 + 0.4
878,675 - -0.9
878,705 - -0.8
878,710 - 1.3
878,713 - 0.6
878,715 + 1.0
878,721 - 0.5
878,722 + 0.4
878,729 - -0.5
878,731 + -0.7
878,736 - -0.1
878,737 + -0.5
878,739 - 0.8
878,758 + 0.1
878,758 + -0.5
878,763 + 1.2
878,768 - -0.5
878,775 - 1.4
878,776 + 0.3
878,779 - -0.5
878,779 - 1.6
878,784 + 1.0
878,790 + 1.0
878,791 - -0.4
878,798 - -1.1
878,799 + 0.2
878,808 + 1.5
878,815 - 0.1
878,818 + -0.4
878,818 + -0.7
878,842 + 0.1
878,847 - 0.5
878,899 - 0.0
878,913 - 0.1
878,941 - 0.1
878,953 + 1.1
878,973 + 0.5
879,034 - 2.3
879,076 - 2.2
879,084 + -0.3
879,087 - -0.5
879,088 + 0.3
879,088 + 0.8
879,089 - -0.0
879,090 + -1.8
879,093 + 1.0
879,106 - -0.4
879,112 + 1.2
879,112 + -0.5
879,112 + 1.5
879,116 + 0.4
879,133 + -0.2
879,136 - 0.8
879,145 - 0.7
879,147 - -0.1
879,154 + -0.3
879,157 - 0.8
879,159 - 0.4
879,159 - 1.1
879,161 - -0.8
879,162 - 0.2
879,165 + 0.4
879,172 - -0.2
879,172 - -0.6
879,173 - 0.3
879,174 - -0.4
879,178 + -0.6
879,188 - -0.0
879,188 - 0.5
879,189 + -0.2
879,190 - 0.2
879,193 + -1.1
879,195 - 0.8
879,197 - 0.2
879,197 + 0.4
879,198 - -0.4
879,205 - -0.7
879,212 + -1.0
879,216 + 1.2
879,218 - 1.4
879,225 + -0.3
879,230 + 1.7
879,238 + 0.6
879,239 - 0.3
879,260 + -0.1
879,273 - 0.6
879,282 + 0.2
879,296 - -2.9
879,296 - -0.3
879,305 + -0.1
879,308 - 0.6
879,309 - 0.5
879,323 - 2.3
879,331 - 0.5
879,331 - 0.7