Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4711

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4710: 13078 - BLAST putative mannoprotein [Rhizoctonia solani 123E], at 824184 to 826218 13078 mRNA_4711: 13079 - KOG1001 Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily, at 826547 to 830720 13079 mRNA_4712: 13080 - HMMPfam-N-terminal C2 in EEIG1 and EHBP1 proteins-PF10358, at 830953 to 834055 13080

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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825,858 - 13078 mRNA_4710 0.82 0.7
825,987 - 13078 mRNA_4710 0.89 0.7
826,022 - 0.5
826,244 - 1.7
826,246 - -0.4
826,247 - -1.7
826,256 - -0.0
826,268 - -0.0
826,277 - 0.9
826,289 - 0.0
826,289 - 0.9
826,290 + -0.6
826,295 + -0.3
826,306 - -0.3
826,314 + -0.5
826,470 - 3.1
826,491 + 1.9
826,584 - 1.0
826,686 + 1.3
826,728 + 1.2
826,885 + 1.1
827,503 + 13079 mRNA_4711 0.23 -0.4
827,874 + 13079 mRNA_4711 0.32 -0.4
828,990 - 13079 mRNA_4711 0.59 1.2
829,030 - 13079 mRNA_4711 0.59 1.6
829,129 - 13079 mRNA_4711 0.62 -0.0
829,168 + 13079 mRNA_4711 0.63 2.1
829,358 - 13079 mRNA_4711 0.67 1.8
829,373 - 13079 mRNA_4711 0.68 0.8
829,476 + 13079 mRNA_4711 0.70 0.1
829,606 - 13079 mRNA_4711 0.73 0.9
829,619 - 13079 mRNA_4711 0.74 0.8
829,635 + 13079 mRNA_4711 0.74 0.1
829,970 - 13079 mRNA_4711 0.82 -0.2
830,076 + 13079 mRNA_4711 0.85 1.4
830,162 + 13079 mRNA_4711 0.87 0.3
830,411 - 0.4
830,518 - -0.6
830,525 + 0.6
830,527 - -0.0
830,644 + -1.6
830,794 + -0.0
830,943 - -0.0
831,409 + 13080 mRNA_4712 0.15 -0.0
831,521 - 13080 mRNA_4712 0.18 1.4
831,703 - 13080 mRNA_4712 0.24 0.8