Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4474

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4473: 12841 - K19782 DSS1, MSU1 exoribonuclease II, mitochondrial, at 265412 to 268856 12841 mRNA_4474: 12842 - K01426 E3.5.1.4, amiE amidase, at 268995 to 271231 12842 mRNA_4475: 12843 - K05917 CYP51 sterol 14-demethylase, at 271874 to 274192 12843

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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268,960 - -1.3
269,057 + -0.1
269,062 + -0.1
269,122 + -0.1
269,245 + 12842 mRNA_4474 0.11 0.8
269,318 - 12842 mRNA_4474 0.14 1.3
269,330 - 12842 mRNA_4474 0.15 -0.4
269,403 + 12842 mRNA_4474 0.18 -0.0
269,417 + 12842 mRNA_4474 0.19 0.2
269,420 + 12842 mRNA_4474 0.19 0.6
269,432 + 12842 mRNA_4474 0.20 1.9
269,554 - 12842 mRNA_4474 0.25 2.0
269,575 - 12842 mRNA_4474 0.26 -0.2
269,612 + 12842 mRNA_4474 0.28 0.5
269,675 + 12842 mRNA_4474 0.30 -0.3
270,207 + 12842 mRNA_4474 0.54 2.2
270,324 - 12842 mRNA_4474 0.59 -2.6
270,454 - 12842 mRNA_4474 0.65 0.7
270,692 - 12842 mRNA_4474 0.76 1.5
270,745 - 12842 mRNA_4474 0.78 0.6
270,863 + 12842 mRNA_4474 0.84 1.9
270,865 + 12842 mRNA_4474 0.84 -1.4
270,873 + 12842 mRNA_4474 0.84 -0.0
271,092 - 0.7
271,158 + -0.9
271,192 + -0.1
271,316 - -0.7
271,346 + -0.3
271,349 - -0.3
271,364 - -3.1
271,372 + -1.0
271,382 - 0.5
271,407 - 1.7
271,441 + -1.3
271,457 - 2.7
271,473 - 0.7
271,483 + -0.4
271,493 + 0.6
271,514 + 0.6
271,516 + -1.8
271,564 - 0.5
271,569 - 0.5
271,570 + 0.6
271,592 - -0.4
271,598 - -1.2
271,603 - -0.0
271,604 + 0.6
271,618 - 1.1
271,618 - 1.4
271,618 + 0.4
271,624 + 0.0
271,628 + 0.8
271,639 - 1.2
271,755 - 1.9
271,804 + -1.2