Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4224

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4223: 12591 - KOG3957 Predicted L-carnitine dehydratase/alpha-methylacyl-CoA racemase, at 1648878 to 1650600 12591 mRNA_4224: 12592 - Hypothetical Protein, at 1650679 to 1653904 12592 mRNA_4225: 12593 - HMMPfam-Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family-PF10342, at 1654260 to 1655493 12593

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,649,787 + 12591 mRNA_4223 0.53 -0.9
1,649,791 + 12591 mRNA_4223 0.53 -0.4
1,650,033 + 12591 mRNA_4223 0.67 -0.7
1,650,152 + 12591 mRNA_4223 0.74 -1.6
1,650,152 - 12591 mRNA_4223 0.74 -0.4
1,650,161 + 12591 mRNA_4223 0.74 0.0
1,650,173 - 12591 mRNA_4223 0.75 -0.7
1,650,182 + 12591 mRNA_4223 0.76 -0.4
1,650,224 - 12591 mRNA_4223 0.78 -1.8
1,650,358 + 12591 mRNA_4223 0.86 0.7
1,650,432 + 0.5
1,650,467 + 2.0
1,650,478 + 0.2
1,650,490 - 0.7
1,650,611 - 1.1
1,650,669 + 0.6
1,650,763 - -1.9
1,650,770 - 0.1
1,650,784 + -0.8
1,650,921 - -0.1
1,650,935 + -0.1
1,651,240 + 12592 mRNA_4224 0.17 0.8
1,651,498 + 12592 mRNA_4224 0.25 -1.0
1,651,831 - 12592 mRNA_4224 0.36 -0.3
1,651,839 + 12592 mRNA_4224 0.36 -0.3
1,652,262 + 12592 mRNA_4224 0.49 1.2
1,652,383 - 12592 mRNA_4224 0.53 -0.3
1,652,385 - 12592 mRNA_4224 0.53 -0.3
1,652,593 - 12592 mRNA_4224 0.59 -0.1
1,652,845 - 12592 mRNA_4224 0.67 0.6
1,653,052 + 12592 mRNA_4224 0.74 -2.5
1,653,150 - 12592 mRNA_4224 0.77 -0.0
1,653,167 - 12592 mRNA_4224 0.77 1.1
1,653,711 + 0.5
1,653,723 + 0.3
1,653,727 - 0.4
1,653,852 + 2.1
1,653,859 - 0.7
1,654,154 + 0.5
1,654,303 - -0.5
1,654,447 - 12593 mRNA_4225 0.15 -0.8
1,654,498 + 12593 mRNA_4225 0.19 0.7
1,654,602 - 12593 mRNA_4225 0.28 0.8
1,654,612 + 12593 mRNA_4225 0.29 1.8
1,654,798 + 12593 mRNA_4225 0.44 -1.1