Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4039

Experiments: YNB Glucose 75mM Methionine

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4038: 12406 - K10772 APEX2 AP endonuclease 2, at 1215030 to 1217455 12406 mRNA_4039: 12407 - K00825 AADAT, KAT2 kynurenine/2-aminoadipate aminotransferase, at 1217761 to 1219740 12407 mRNA_4040: 12408 - K06997 yggS, PROSC PLP dependent protein, at 1219882 to 1220973 12408

Please try another browser if this message remains

Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
remove
1,217,188 + 12406 mRNA_4038 0.89 0.8
1,217,194 - 12406 mRNA_4038 0.89 1.8
1,217,199 - 12406 mRNA_4038 0.89 0.5
1,217,255 + -1.9
1,217,335 - 0.2
1,217,348 - 0.3
1,217,462 + -0.8
1,217,480 - 0.9
1,217,494 - 2.6
1,217,504 + 0.2
1,217,631 - -0.2
1,217,632 - 0.6
1,217,633 + 0.2
1,217,638 - 0.5
1,217,643 - -1.3
1,217,643 - 0.5
1,217,652 + -0.3
1,217,787 - -0.6
1,217,799 + 0.3
1,217,799 + 0.7
1,217,949 + -0.3
1,219,094 - 12407 mRNA_4039 0.67 0.7
1,219,103 + 12407 mRNA_4039 0.68 0.9
1,219,239 - 12407 mRNA_4039 0.75 0.7
1,219,539 + 12407 mRNA_4039 0.90 0.3
1,219,552 - -1.0
1,219,698 + 1.8
1,219,831 - 0.4
1,219,849 - 1.7
1,219,855 + 0.5
1,219,858 + 0.6
1,220,008 + 12408 mRNA_4040 0.12 -0.6
1,220,132 + 12408 mRNA_4040 0.23 -0.6
1,220,271 + 12408 mRNA_4040 0.36 0.6
1,220,425 + 12408 mRNA_4040 0.50 0.3
1,220,581 + 12408 mRNA_4040 0.64 -0.2
1,220,599 + 12408 mRNA_4040 0.66 -0.3
1,220,701 - 12408 mRNA_4040 0.75 -0.4
1,220,724 - 12408 mRNA_4040 0.77 2.4