Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3999

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3998: 12366 - HMMPfam-bZIP transcription factor-PF00170,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 1110088 to 1111091 12366 mRNA_3999: 12367 - KOG1341 Na+/K+ transporter, at 1111702 to 1115806 12367

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,111,004 + 0.2
1,111,079 + -0.2
1,112,046 - -0.2
1,112,216 - 12367 mRNA_3999 0.13 0.8
1,112,752 - 12367 mRNA_3999 0.26 -0.7
1,112,780 + 12367 mRNA_3999 0.26 0.4
1,113,645 - 12367 mRNA_3999 0.47 0.1
1,113,669 + 12367 mRNA_3999 0.48 -2.1
1,113,840 - 12367 mRNA_3999 0.52 -0.7
1,113,966 - 12367 mRNA_3999 0.55 0.1
1,114,537 + 12367 mRNA_3999 0.69 2.8
1,114,835 - 12367 mRNA_3999 0.76 0.6
1,114,850 + 12367 mRNA_3999 0.77 -0.4
1,115,226 - 12367 mRNA_3999 0.86 0.1
1,115,547 - -0.7
1,115,846 - -1.0
1,115,968 - 0.4
1,115,983 - 1.0
1,116,129 - 3.1
1,116,311 + -1.4
1,116,314 + -1.0
1,116,314 - -0.4
1,116,314 + -1.1
1,116,321 - -1.2
1,116,446 + 0.3
1,116,448 + 0.4
1,116,586 + 0.2
1,116,592 + 1.0
1,116,603 + 0.1