Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3807

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3806: 12174 - K02365 ESP1 separase, at 618283 to 626082 12174 mRNA_3807: 12175 - HMMPfam-Docking domain of Afi1 for Arf3 in vesicle trafficking-PF07792,HMMPfam-Stabilization of polarity axis-PF08616, at 626477 to 629699 12175 mRNA_3808: 12176 - Hypothetical Protein, at 629784 to 630446 12176

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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626,137 + 1.4
626,141 + -1.2
626,161 + -1.0
626,282 - 1.4
626,295 + -0.2
626,296 - -0.7
626,431 - 0.2
626,440 - 0.7
626,446 + 0.2
626,452 - 1.0
626,553 - 1.6
626,615 - 1.0
626,731 + 1.7
626,740 - 1.0
626,744 - 2.3
626,767 - 1.1
626,808 + 12175 mRNA_3807 0.10 0.6
626,936 - 12175 mRNA_3807 0.14 -0.2
627,298 + 12175 mRNA_3807 0.25 0.1
627,343 + 12175 mRNA_3807 0.27 1.9
627,470 - 12175 mRNA_3807 0.31 1.7
627,618 - 12175 mRNA_3807 0.35 1.8
627,634 + 12175 mRNA_3807 0.36 -0.8
627,640 - 12175 mRNA_3807 0.36 1.1
627,734 + 12175 mRNA_3807 0.39 0.8
628,041 - 12175 mRNA_3807 0.49 0.4
628,045 + 12175 mRNA_3807 0.49 0.7
628,099 + 12175 mRNA_3807 0.50 0.4
628,103 + 12175 mRNA_3807 0.50 0.1
628,245 - 12175 mRNA_3807 0.55 1.2
628,245 - 12175 mRNA_3807 0.55 1.1
628,266 - 12175 mRNA_3807 0.56 1.3
628,333 - 12175 mRNA_3807 0.58 2.0
628,349 - 12175 mRNA_3807 0.58 0.5
628,401 - 12175 mRNA_3807 0.60 1.1
628,490 - 12175 mRNA_3807 0.62 1.4
628,596 - 12175 mRNA_3807 0.66 1.4
628,636 - 12175 mRNA_3807 0.67 0.9
628,661 + 12175 mRNA_3807 0.68 -0.4
628,724 - 12175 mRNA_3807 0.70 -0.5
628,934 + 12175 mRNA_3807 0.76 0.1
629,061 - 12175 mRNA_3807 0.80 1.2
629,107 - 12175 mRNA_3807 0.82 2.5
629,339 - 12175 mRNA_3807 0.89 1.1
629,467 - 1.2
629,467 - 1.3
629,512 + 2.2
630,520 - -0.6
630,642 - 1.2
630,646 + -1.6
630,656 + -0.8
630,668 + 0.7