Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3640

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3639: 12007 - K11204 GCLC glutamate--cysteine ligase catalytic subunit, at 225683 to 228983 12007 mRNA_3640: 12008 - ProSiteProfiles-Zinc finger SWIM-type profile.-PS50966, at 229768 to 230624 12008 mRNA_3641: 12009 - K17615 PPG1 serine/threonine-protein phosphatase PPG1, at 230658 to 231997 12009

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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228,996 + 0.2
229,004 + 0.1
229,012 + -1.4
229,121 - -0.1
229,139 - -0.0
229,140 + -0.1
229,281 - 1.2
229,282 + 0.5
229,289 - 0.1
229,291 + 0.1
229,292 + 0.6
229,298 - -0.6
229,299 + -0.1
229,302 + 0.4
229,314 + 0.9
229,317 + 0.2
229,320 + 1.9
229,326 - -0.7
229,326 - 0.3
229,327 + -0.5
229,596 + -0.6
229,750 - 0.4
229,868 + 12008 mRNA_3640 0.12 0.9
229,870 - 12008 mRNA_3640 0.12 -1.0
229,872 - 12008 mRNA_3640 0.12 0.1
230,158 - 12008 mRNA_3640 0.46 -0.1
230,176 + 12008 mRNA_3640 0.48 1.1
230,185 - 12008 mRNA_3640 0.49 -0.0
230,218 - 12008 mRNA_3640 0.53 -0.3
230,302 + 12008 mRNA_3640 0.62 1.0
230,308 + 12008 mRNA_3640 0.63 0.1
230,474 + 12008 mRNA_3640 0.82 1.3
230,495 + 12008 mRNA_3640 0.85 1.1
230,587 + 0.3
230,605 + 1.2
230,630 + 1.7
230,658 - 1.5
230,915 + 12009 mRNA_3641 0.19 1.8
231,185 + 12009 mRNA_3641 0.39 0.2