Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3565

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3564: 11932 - Hypothetical Protein, at 63584 to 64390 11932 mRNA_3565: 11933 - KOG0254 Predicted transporter (major facilitator superfamily), at 64818 to 67834 11933 mRNA_3566: 11934 - HMMPfam-Opioid growth factor receptor (OGFr) conserved region-PF04664, at 68325 to 69478 11934

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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63,826 + 11932 mRNA_3564 0.30 0.3
63,842 - 11932 mRNA_3564 0.32 0.0
63,850 + 11932 mRNA_3564 0.33 0.3
63,914 - 11932 mRNA_3564 0.41 1.8
63,982 - 11932 mRNA_3564 0.49 0.2
63,992 - 11932 mRNA_3564 0.51 -0.4
63,996 - 11932 mRNA_3564 0.51 0.7
63,998 + 11932 mRNA_3564 0.51 -1.2
64,015 + 11932 mRNA_3564 0.53 1.7
64,058 + 11932 mRNA_3564 0.59 0.8
64,095 + 11932 mRNA_3564 0.63 2.5
64,132 - 11932 mRNA_3564 0.68 1.5
64,239 - 11932 mRNA_3564 0.81 1.4
64,242 - 11932 mRNA_3564 0.82 0.1
64,252 + 11932 mRNA_3564 0.83 0.1
64,267 + 11932 mRNA_3564 0.85 0.4
64,298 - 11932 mRNA_3564 0.88 0.4
64,362 - 1.0
64,392 - 0.7
64,403 - 1.1
64,416 - 1.5
64,425 - 0.9
64,518 + -1.2
64,528 + 0.7
64,575 + -0.9
64,658 + -1.2
64,699 + -0.2
64,730 + 0.7
64,733 - 1.6
64,756 - -2.3
65,032 + -2.7
65,051 + -1.0
65,056 + -1.3
65,205 - 11933 mRNA_3565 0.13 0.6
65,389 - 11933 mRNA_3565 0.19 0.4
65,397 + 11933 mRNA_3565 0.19 -0.9
65,444 - 11933 mRNA_3565 0.21 0.1
65,457 + 11933 mRNA_3565 0.21 0.9
65,569 - 11933 mRNA_3565 0.25 1.1
65,586 - 11933 mRNA_3565 0.25 -0.6
65,734 - 11933 mRNA_3565 0.30 -1.5
66,001 - 11933 mRNA_3565 0.39 0.5
66,646 + 11933 mRNA_3565 0.61 -1.0
66,769 + 11933 mRNA_3565 0.65 -0.5
67,083 + 11933 mRNA_3565 0.75 -1.2
67,084 - 11933 mRNA_3565 0.75 -1.7
67,192 - 11933 mRNA_3565 0.79 1.5
67,345 - 11933 mRNA_3565 0.84 1.1
67,730 + -1.0
67,893 - 1.1
67,913 + -1.7
67,917 - -0.1
68,040 - 1.2
68,047 + 0.3
68,052 - 0.1
68,063 - 2.4
68,072 + 0.1
68,075 + -0.7
68,165 - -0.8
68,174 + 0.9
68,174 - -0.4
68,209 + -0.2
68,209 - 1.2
68,214 - 0.9
68,217 + 0.5
68,226 - -0.6
68,226 + 0.2
68,227 + 0.7
68,238 - -0.2
68,239 - 0.5
68,246 + -0.7
68,259 + 0.3
68,289 - 0.4
68,314 + 0.7
68,356 - -0.3
68,390 + 1.2
68,392 - 0.4
68,395 - 1.4
68,500 + 11934 mRNA_3566 0.15 0.3
68,647 + 11934 mRNA_3566 0.28 -0.3
68,665 + 11934 mRNA_3566 0.29 0.4