Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3558

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3557: 11925 - K01634 SGPL1, DPL1 sphinganine-1-phosphate aldolase, at 41446 to 43898 11925 mRNA_3558: 11926 - K14808 DDX54, DBP10 ATP-dependent RNA helicase DDX54/DBP10, at 44062 to 47314 11926 mRNA_3559: 11927 - K18622 ADD adducin, at 47596 to 49033 11927

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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43,320 - 11925 mRNA_3557 0.76 0.9
43,869 - 0.1
43,894 - 0.3
43,895 + 1.3
44,664 - 11926 mRNA_3558 0.19 -1.1
47,522 - -0.3
47,525 + -0.6
47,529 - 0.3
47,530 - 0.6
47,532 + 0.8
47,533 - -0.1
47,536 - -0.0
47,536 - 0.5
47,537 + 0.4
47,537 + 0.9
47,538 - 2.1
47,538 + 0.4
47,539 + 0.4
47,547 - 0.3
47,553 + -0.9
47,563 - 0.1
47,709 + -1.9
47,713 - -0.3
47,906 + 11927 mRNA_3559 0.22 -1.6
48,016 - 11927 mRNA_3559 0.29 -0.4
48,283 + 11927 mRNA_3559 0.48 0.4