Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3385

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3385: 11753 - HMMPfam-Gamma interferon inducible lysosomal thiol reductase (GILT)-PF03227, at 554455 to 555770 11753 mRNA_3386: 11754 - K05756 ARPC3 actin related protein 2/3 complex, subunit 3, at 556119 to 557419 11754

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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553,560 + 0.6
554,046 + 0.1
554,060 + 0.1
554,186 + 0.3
554,333 + 0.7
554,339 - 0.4
554,345 - -1.3
554,345 + 0.3
554,346 + 0.5
554,347 + 0.1
554,351 - 0.5
554,361 + -0.1
554,362 + 2.6
554,369 - -0.3
554,389 - 0.5
554,390 + -2.1
554,400 - 1.5
554,632 - 11753 mRNA_3385 0.13 0.3
554,644 + 11753 mRNA_3385 0.14 -0.3
554,673 - 11753 mRNA_3385 0.17 1.5
554,789 - 11753 mRNA_3385 0.25 -0.3
554,793 - 11753 mRNA_3385 0.26 0.5
554,938 + 11753 mRNA_3385 0.37 0.5
554,941 - 11753 mRNA_3385 0.37 0.7
555,086 + 11753 mRNA_3385 0.48 0.5
555,302 - 11753 mRNA_3385 0.64 0.2
555,385 + 11753 mRNA_3385 0.71 0.3
555,632 + 11753 mRNA_3385 0.89 1.1
555,812 + 0.6
555,813 - 1.3
555,958 - 1.4
555,965 + 1.7
555,967 + 0.5
555,975 + 1.8
555,976 - -1.9
555,989 + 0.5
556,011 - -0.4