Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3319

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3318: 11686 - K14640 SLC20A, PIT solute carrier family 20 (sodium-dependent phosphate transporter), at 383705 to 386213 11686 mRNA_3319: 11687 - KOG3854 SPRT-like metalloprotease, at 386428 to 389154 11687 mRNA_3320: 11688 - KOG2493 Na+/Pi symporter, at 389310 to 390792 11688

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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385,545 - 11686 mRNA_3318 0.73 0.5
385,615 + 11686 mRNA_3318 0.76 -0.1
385,755 + 11686 mRNA_3318 0.82 -2.1
385,932 - 11686 mRNA_3318 0.89 0.6
385,997 + -0.2
386,084 + 0.1
386,446 + -0.4
386,461 + 0.2
386,477 - -0.9
387,070 + 11687 mRNA_3319 0.24 -0.3
387,091 + 11687 mRNA_3319 0.24 -0.6
387,183 - 11687 mRNA_3319 0.28 0.8
387,186 + 11687 mRNA_3319 0.28 0.3
387,458 - 11687 mRNA_3319 0.38 0.6
387,483 + 11687 mRNA_3319 0.39 1.7
387,539 + 11687 mRNA_3319 0.41 -0.2
387,600 + 11687 mRNA_3319 0.43 -0.6
387,638 + 11687 mRNA_3319 0.44 -1.0
388,502 + 11687 mRNA_3319 0.76 0.0
388,629 + 11687 mRNA_3319 0.81 1.7
388,632 + 11687 mRNA_3319 0.81 0.4
388,638 + 11687 mRNA_3319 0.81 1.6
388,790 + 11687 mRNA_3319 0.87 0.2
388,930 - 2.3
388,931 + 0.0
389,219 + -0.4
389,236 - 0.0
389,260 - 0.4
389,269 + -0.1
389,271 + -0.3
389,273 - -1.9
389,280 - 0.6
389,280 - -0.6
389,282 + 0.5
389,293 + 0.7
389,344 + 0.5
389,378 + -0.3
389,395 - 0.1
389,407 + -1.9
389,409 - 0.6
389,411 + -0.1
389,411 - 1.0
389,413 - 2.6
389,424 + 0.8
389,425 - -0.4
389,520 + 11688 mRNA_3320 0.14 -0.8
389,568 + 11688 mRNA_3320 0.17 0.2
389,612 + 11688 mRNA_3320 0.20 -1.0
389,684 + 11688 mRNA_3320 0.25 1.3
389,779 - 11688 mRNA_3320 0.32 0.1
389,864 + 11688 mRNA_3320 0.37 -0.9