Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3274

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3273: 11641 - K13754 SLC24A6, NCKX6 solute carrier family 24 (sodium/potassium/calcium exchanger), member 6, at 259466 to 262865 11641 mRNA_3274: 11642 - K00108 betA, CHDH choline dehydrogenase, at 263216 to 265708 11642 mRNA_3275: 11643 - BLAST methyltransferase [Obba rivulosa], at 265766 to 267917 11643

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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262,716 - 0.7
262,821 - 0.5
262,834 + -0.5
262,847 - 0.1
262,852 + 1.9
262,852 + 1.0
262,894 - 1.8
262,962 + -0.3
262,964 - 0.1
262,990 + -0.8
263,032 + 0.0
263,040 - -0.3
263,049 + -0.3
263,054 - 1.6
263,131 + 0.4
263,261 + 1.6
263,261 + -0.3
263,541 + 11642 mRNA_3274 0.13 0.9
263,861 + 11642 mRNA_3274 0.26 0.1
264,150 + 11642 mRNA_3274 0.37 1.6
264,225 - 11642 mRNA_3274 0.40 -0.3
264,412 - 11642 mRNA_3274 0.48 0.4
264,547 - 11642 mRNA_3274 0.53 -0.8
264,682 - 11642 mRNA_3274 0.59 0.2
264,861 - 11642 mRNA_3274 0.66 -0.2
264,899 - 11642 mRNA_3274 0.68 -0.3
264,950 - 11642 mRNA_3274 0.70 -0.5
265,311 - 11642 mRNA_3274 0.84 1.0
265,430 + 11642 mRNA_3274 0.89 -0.6
265,455 - 11642 mRNA_3274 0.90 1.0
265,468 + 0.3
265,536 + -0.3
265,537 - -0.4
265,549 + 0.1
265,549 + 0.6
265,649 - 0.7
265,655 - -1.1
265,658 + 1.8
265,658 + 0.2
265,666 - 0.4
265,685 - 0.8
265,689 + 0.2
265,700 - -0.6
265,705 + -0.5
265,786 - 1.2
265,818 + -1.8
265,821 + -1.1
265,824 - 0.1
265,826 + -2.3
265,827 + -0.4
265,828 + 0.6
265,835 + -0.6
265,835 + 1.5
265,836 - -0.4
265,839 - 1.7
265,839 - 0.9
265,841 + 0.4
265,845 + 0.5
265,852 + 0.7
265,853 - 1.0
265,853 - -0.9
265,855 - -0.9
265,856 + 1.6
265,856 + -1.1
265,856 - 2.2
265,866 + 0.0
265,867 + 1.4
265,868 - -1.5
265,871 - -0.8
265,872 - -0.3
265,873 + 0.5
265,874 - 0.6
265,874 + 0.8
265,875 - 0.1
265,876 - 0.6
265,878 - 0.2
265,879 - 0.7
265,881 - 0.6
265,882 - 0.2
265,883 + -0.5
265,883 + 0.6
265,889 - 0.2
265,889 - 0.2
265,892 + -2.0
265,893 + -0.7
265,893 - -0.6
265,898 - -2.2
265,899 - 0.3
265,899 + -1.1
265,901 + -2.5
265,902 + 1.1
265,907 - -1.8
265,907 - -1.0
265,910 - 0.4
265,934 - 1.1
265,947 - 1.1
265,949 - -0.2
265,949 - 0.9
265,952 - 0.4
265,952 - -1.0
265,955 + -0.9
265,956 + 0.3
265,956 + -1.1
265,969 + 1.0
265,969 + 2.5
265,983 - 11643 mRNA_3275 0.10 0.3
265,988 + 11643 mRNA_3275 0.10 1.4
265,995 + 11643 mRNA_3275 0.11 1.3
266,013 - 11643 mRNA_3275 0.11 0.8
266,027 - 11643 mRNA_3275 0.12 1.4
266,051 - 11643 mRNA_3275 0.13 1.1
266,053 - 11643 mRNA_3275 0.13 0.7
266,062 - 11643 mRNA_3275 0.14 0.6
266,156 + 11643 mRNA_3275 0.18 -0.9
266,164 - 11643 mRNA_3275 0.18 -0.6
266,171 + 11643 mRNA_3275 0.19 0.5
266,174 - 11643 mRNA_3275 0.19 0.9
266,201 - 11643 mRNA_3275 0.20 -0.4
266,209 - 11643 mRNA_3275 0.21 1.2
266,226 - 11643 mRNA_3275 0.21 -0.3
266,341 - 11643 mRNA_3275 0.27 0.0
266,638 + 11643 mRNA_3275 0.41 0.3