Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3172

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4085 to 5766 11539 mRNA_3172: 11540 - Hypothetical Protein, at 6329 to 7697 11540 mRNA_3173: 11541 - K09497 CCT5 T-complex protein 1 subunit epsilon, at 7947 to 10272 11541

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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5,341 - 11539 mRNA_3171 0.75 0.1
5,477 + 11539 mRNA_3171 0.83 -1.4
5,496 - 11539 mRNA_3171 0.84 0.1
5,503 + 11539 mRNA_3171 0.84 -2.0
5,510 + 11539 mRNA_3171 0.85 0.4
5,514 + 11539 mRNA_3171 0.85 0.1
5,600 + -0.2
5,646 - -0.8
5,663 - -1.0
5,664 + -0.8
5,769 + -0.8
5,779 - 0.4
5,781 + -2.4
5,795 - -0.0
5,801 - -0.6
5,801 + -1.0
5,803 - -0.2
5,822 - -0.4
5,824 + -0.0
5,828 - 0.7
5,835 - -0.1
5,836 - 0.5
5,836 + 1.5
5,841 - 0.7
5,842 + 3.8
5,852 - 0.2
5,868 - 1.5
5,971 + 0.7
5,974 + 0.5
5,974 - 1.5
5,978 + -0.1
5,979 - 0.2
5,981 + -0.4
5,983 + 0.4
5,984 + 2.4
5,989 - 0.1
5,991 + 0.6
6,000 + 2.5
6,001 + -1.2
6,002 - -0.7
6,008 + -0.0
6,040 - 0.9
6,068 + -0.3
6,084 + 1.6
6,084 - -0.9
6,089 + -2.5
6,094 - 0.7
6,095 - -0.1
6,096 + 1.6
6,097 + 0.7
6,099 - -0.4
6,100 + -0.7
6,110 - 0.0
6,150 + 0.6
6,153 - -0.4
6,167 + 0.8
6,180 + -0.0
6,186 - 1.2
6,194 + 0.1
6,204 + -2.1
6,230 + 1.3
6,252 - 1.4
6,310 - 1.1
6,311 - -0.5
6,321 - 1.0
6,323 + 0.5
6,327 + 0.7
6,328 - -0.0
6,330 - 0.8
6,332 - -0.2
6,333 + 0.2
6,333 + 1.0
6,334 - 0.5
6,343 + -0.9
6,347 - 0.2
6,348 + -2.0
6,349 + -1.0
6,349 - 1.3
6,353 + 0.4
6,362 - -0.4
6,364 + 0.7
6,368 + -0.8
6,369 + -0.0
6,370 + -1.1
6,372 + 1.2
6,376 - -1.3
6,387 + 0.7
6,390 - 2.1
6,392 + -1.0
6,403 + -0.1
6,408 + -0.1
6,410 + -1.1
6,419 + 0.5
6,466 + 11540 mRNA_3172 0.10 -1.2
6,471 + 11540 mRNA_3172 0.10 0.9
6,501 + 11540 mRNA_3172 0.13 0.7
6,512 + 11540 mRNA_3172 0.13 -1.0
6,520 + 11540 mRNA_3172 0.14 0.1
6,556 - 11540 mRNA_3172 0.17 1.3
6,563 + 11540 mRNA_3172 0.17 -0.5
6,570 + 11540 mRNA_3172 0.18 0.2
6,577 + 11540 mRNA_3172 0.18 0.8
6,580 + 11540 mRNA_3172 0.18 0.4
6,652 - 11540 mRNA_3172 0.24 0.6
6,680 + 11540 mRNA_3172 0.26 2.5
6,730 - 11540 mRNA_3172 0.29 -0.4
6,750 - 11540 mRNA_3172 0.31 0.2
6,886 + 11540 mRNA_3172 0.41 -2.0
6,998 - 11540 mRNA_3172 0.49 0.2
7,000 - 11540 mRNA_3172 0.49 -0.3
7,011 + 11540 mRNA_3172 0.50 1.9
7,286 + 11540 mRNA_3172 0.70 -0.1
7,389 + 11540 mRNA_3172 0.77 -0.5
7,459 + 11540 mRNA_3172 0.83 -1.0
7,565 + -0.4
7,619 + -1.1
7,740 - 0.0
7,759 + -0.9
7,902 - 0.1
7,928 + -1.6