Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3170

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538 mRNA_3171: 11539 - ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048, at 4085 to 5766 11539

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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1,174 - 11537 mRNA_3169 0.65 -0.8
1,174 + 11537 mRNA_3169 0.65 0.0
1,259 + 11537 mRNA_3169 0.73 0.6
1,265 + 11537 mRNA_3169 0.74 0.0
1,268 + 11537 mRNA_3169 0.74 1.0
1,269 - 11537 mRNA_3169 0.74 0.5
1,288 - 11537 mRNA_3169 0.76 1.1
1,297 + 11537 mRNA_3169 0.77 -0.3
1,303 - 11537 mRNA_3169 0.78 -1.0
1,399 + 11537 mRNA_3169 0.87 1.3
1,412 - 11537 mRNA_3169 0.88 0.2
1,419 - 11537 mRNA_3169 0.89 -0.3
1,423 - 11537 mRNA_3169 0.90 -4.7
1,429 - 2.3
1,453 + -0.3
1,459 + 0.2
1,459 + -0.8
1,460 - 0.3
1,461 + -0.2
1,462 + -0.0
1,467 + -0.1
1,470 - -0.4
1,474 - 0.2
1,485 + -1.3
1,520 + -2.0
1,523 + 1.8
1,531 - 0.0
1,537 + 0.0
1,541 + 0.1
1,562 + 0.8
1,567 + 0.2
1,572 + 0.1
1,582 - -0.4
1,584 - -0.6
1,589 + -0.2
1,596 - 0.9
1,601 - 0.0
1,602 + -1.3
1,605 + -2.5
1,609 + -1.3
1,616 + -0.0
1,636 + 1.5
1,654 + 0.1
1,656 - -0.1
1,666 + 0.0
1,675 - 0.7
1,682 - 0.1
1,697 - -0.1
1,709 + 1.9
1,709 - 0.3
1,711 + 0.6
1,718 - -3.3
1,719 + -0.3
1,722 - 0.1
1,723 + 0.3
1,725 - -1.3
1,725 - -0.4
1,727 + -0.9
1,730 + 0.3
1,731 + 1.3
1,732 + -0.1
1,732 + 0.3
1,734 + -0.6
1,734 + 0.3
1,734 + 0.5
1,739 - -0.1
1,740 + -0.0
1,744 - 0.6
1,747 + 0.0
1,749 + 1.1
1,759 + -0.7
1,759 + 0.3
1,759 + 0.4
1,761 + 0.0
1,763 + 1.7
1,765 + 0.2
1,767 + 0.8
1,769 + 0.8
1,772 + 1.9
1,772 + 0.8
1,774 + -0.7
1,774 + 0.9
1,775 + 1.8
1,776 - 0.6
1,776 + -2.5
1,777 + -0.6
1,778 + 1.2
1,778 - 0.4
1,781 - 1.6
1,783 - 1.0
1,783 - 0.3
1,783 - 0.8
1,783 - -0.5
1,784 + 0.8
1,789 + 0.8
1,789 - -0.7
1,791 + 0.7
1,792 + -0.6
1,793 + 0.3
1,795 + -0.6
1,796 + -0.4
1,796 - 0.1
1,798 + 0.3
1,800 + -0.2
1,801 + 1.5
1,805 + 0.1
1,805 + -1.6
1,807 + -0.8
1,813 - 0.1
1,814 + -0.5
1,814 + 2.3
1,818 - -1.0
1,851 - -0.9
1,874 + 0.8
1,881 - -0.5
1,885 - -0.0
1,891 - -1.1
1,896 - 1.9
1,912 + 0.5
1,912 + -0.6
1,914 - -1.0
1,916 - -1.7
1,917 - 0.1
1,919 + -0.0
1,922 - 0.8
1,923 - -1.0
1,934 - 0.9
1,935 + 1.1
1,938 - -0.1
1,938 - 0.3
1,940 - -2.0
1,941 + -0.1
1,941 + 1.4
1,942 + -0.8
1,943 - 0.1
1,944 + 1.1
1,944 - 1.1
1,945 - 1.0
1,945 + 0.6
1,946 - -0.6
1,947 + 1.1
1,960 - -0.2
1,968 + -1.4
1,980 + 0.4
2,015 + 1.1
2,067 - -0.0
2,081 - 2.2
2,091 + -0.8
2,220 + 1.5
2,229 - -0.4
2,235 - -0.9
2,237 - -0.3
2,242 + 0.1
2,242 - 0.1
2,245 - 1.5
2,248 - 0.1
2,251 + 1.5
2,254 - -0.3
2,261 + 0.9
2,262 - 2.4
2,266 + 0.1
2,268 + 0.3
2,400 + 11538 mRNA_3170 0.21 0.1
2,401 - 11538 mRNA_3170 0.21 -0.2
2,404 + 11538 mRNA_3170 0.22 -0.9
2,414 + 11538 mRNA_3170 0.23 -2.2
2,420 - 11538 mRNA_3170 0.23 0.0
2,439 + 11538 mRNA_3170 0.25 -1.2
2,446 + 11538 mRNA_3170 0.26 0.2
2,470 - 11538 mRNA_3170 0.28 0.9
2,516 - 11538 mRNA_3170 0.32 -1.6
2,550 - 11538 mRNA_3170 0.35 0.3
2,553 + 11538 mRNA_3170 0.36 0.2
2,569 + 11538 mRNA_3170 0.37 -2.9
2,573 - 11538 mRNA_3170 0.38 0.1
2,581 + 11538 mRNA_3170 0.38 -1.2
2,582 + 11538 mRNA_3170 0.38 -1.1
2,611 + 11538 mRNA_3170 0.41 1.0
2,698 + 11538 mRNA_3170 0.49 -0.4
2,699 + 11538 mRNA_3170 0.49 0.1
2,755 + 11538 mRNA_3170 0.55 -0.3
2,853 + 11538 mRNA_3170 0.64 -2.1
3,014 - 11538 mRNA_3170 0.79 -0.3
3,407 - 0.9
3,547 - 0.2
3,604 + -1.6
3,607 + 0.1
3,739 - 2.3
3,768 + 0.6
4,061 + -0.6
4,136 - -0.1
4,162 + -0.5
4,176 + 1.4