Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3169

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3169: 11537 - Hypothetical Protein, at 529 to 1526 11537 mRNA_3170: 11538 - Hypothetical Protein, at 2174 to 3237 11538

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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12 + -0.6
12 + 1.4
15 + -0.1
16 + 1.2
18 + -0.1
22 + 0.7
25 + -1.9
57 - -1.0
61 - 0.9
62 + -0.9
62 + 0.1
66 + 0.5
72 + 0.1
72 + -0.8
72 + -0.4
75 + -0.5
78 - -0.3
105 + 1.5
110 - -1.2
114 + 0.4
115 + 0.5
118 + 0.4
122 + 0.7
122 - 0.1
124 + 1.5
135 + 0.6
147 + 1.8
157 + 2.0
161 + 0.4
168 + 1.7
174 + 0.2
177 - -0.2
228 + 0.1
247 + -0.3
252 - 0.9
253 - -0.8
255 + 1.0
258 + -0.5
264 - 0.9
269 + 0.3
269 - 0.5
274 + -0.1
275 - 0.8
277 + -3.2
280 + 2.0
280 + -0.9
283 - 1.2
285 - -0.1
287 + -0.1
287 + 0.2
288 + 1.4
292 - 0.5
293 + -0.1
298 + 0.7
305 - 0.1
314 + 1.6
320 + 2.1
368 + 1.5
370 - -1.3
372 + -0.3
382 + 2.2
384 + -0.0
391 + 1.0
391 - 1.3
397 + 1.2
397 - 1.5
402 + -1.0
405 + -0.2
423 - 1.6
430 + 1.8
440 + 2.6
446 + 4.1
470 + -0.3
524 + 1.5
532 + -0.1
545 - -0.0
557 + -0.0
569 + 0.2
570 - -0.3
583 + 0.6
584 + 0.4
603 - 0.6
603 + -0.5
634 - 11537 mRNA_3169 0.11 0.1
636 + 11537 mRNA_3169 0.11 -1.1
646 + 11537 mRNA_3169 0.12 -0.1
661 + 11537 mRNA_3169 0.13 0.6
667 + 11537 mRNA_3169 0.14 0.6
698 + 11537 mRNA_3169 0.17 0.8
704 - 11537 mRNA_3169 0.18 1.0
705 - 11537 mRNA_3169 0.18 1.4
721 - 11537 mRNA_3169 0.19 0.0
725 + 11537 mRNA_3169 0.20 1.2
738 - 11537 mRNA_3169 0.21 0.4
849 + 11537 mRNA_3169 0.32 0.5
871 + 11537 mRNA_3169 0.34 -0.9
883 + 11537 mRNA_3169 0.35 -0.0
894 + 11537 mRNA_3169 0.37 0.2
895 + 11537 mRNA_3169 0.37 0.7
922 + 11537 mRNA_3169 0.39 0.5
965 - 11537 mRNA_3169 0.44 -0.2
1,012 - 11537 mRNA_3169 0.48 1.1
1,026 + 11537 mRNA_3169 0.50 1.5
1,026 + 11537 mRNA_3169 0.50 0.7
1,105 + 11537 mRNA_3169 0.58 -0.8
1,123 + 11537 mRNA_3169 0.60 -0.0
1,141 + 11537 mRNA_3169 0.61 -0.3
1,142 + 11537 mRNA_3169 0.61 0.3
1,165 + 11537 mRNA_3169 0.64 -0.8
1,174 - 11537 mRNA_3169 0.65 -0.8
1,174 + 11537 mRNA_3169 0.65 0.0
1,259 + 11537 mRNA_3169 0.73 0.6
1,265 + 11537 mRNA_3169 0.74 0.0
1,268 + 11537 mRNA_3169 0.74 1.0
1,269 - 11537 mRNA_3169 0.74 0.5
1,288 - 11537 mRNA_3169 0.76 1.1
1,297 + 11537 mRNA_3169 0.77 -0.3
1,303 - 11537 mRNA_3169 0.78 -1.0
1,399 + 11537 mRNA_3169 0.87 1.3
1,412 - 11537 mRNA_3169 0.88 0.2
1,419 - 11537 mRNA_3169 0.89 -0.3
1,423 - 11537 mRNA_3169 0.90 -4.7
1,429 - 2.3
1,453 + -0.3
1,459 + 0.2
1,459 + -0.8
1,460 - 0.3
1,461 + -0.2
1,462 + -0.0
1,467 + -0.1
1,470 - -0.4
1,474 - 0.2
1,485 + -1.3
1,520 + -2.0
1,523 + 1.8
1,531 - 0.0
1,537 + 0.0
1,541 + 0.1
1,562 + 0.8
1,567 + 0.2
1,572 + 0.1
1,582 - -0.4
1,584 - -0.6
1,589 + -0.2
1,596 - 0.9
1,601 - 0.0
1,602 + -1.3
1,605 + -2.5
1,609 + -1.3
1,616 + -0.0
1,636 + 1.5
1,654 + 0.1
1,656 - -0.1
1,666 + 0.0
1,675 - 0.7
1,682 - 0.1
1,697 - -0.1
1,709 + 1.9
1,709 - 0.3
1,711 + 0.6
1,718 - -3.3
1,719 + -0.3
1,722 - 0.1
1,723 + 0.3
1,725 - -1.3
1,725 - -0.4
1,727 + -0.9
1,730 + 0.3
1,731 + 1.3
1,732 + -0.1
1,732 + 0.3
1,734 + -0.6
1,734 + 0.3
1,734 + 0.5
1,739 - -0.1
1,740 + -0.0
1,744 - 0.6
1,747 + 0.0
1,749 + 1.1
1,759 + -0.7
1,759 + 0.3
1,759 + 0.4
1,761 + 0.0
1,763 + 1.7
1,765 + 0.2
1,767 + 0.8
1,769 + 0.8
1,772 + 1.9
1,772 + 0.8
1,774 + -0.7
1,774 + 0.9
1,775 + 1.8
1,776 - 0.6
1,776 + -2.5
1,777 + -0.6
1,778 + 1.2
1,778 - 0.4
1,781 - 1.6
1,783 - 1.0
1,783 - 0.3
1,783 - 0.8
1,783 - -0.5
1,784 + 0.8
1,789 + 0.8
1,789 - -0.7
1,791 + 0.7
1,792 + -0.6
1,793 + 0.3
1,795 + -0.6
1,796 + -0.4
1,796 - 0.1
1,798 + 0.3
1,800 + -0.2
1,801 + 1.5
1,805 + 0.1
1,805 + -1.6
1,807 + -0.8
1,813 - 0.1
1,814 + -0.5
1,814 + 2.3
1,818 - -1.0
1,851 - -0.9
1,874 + 0.8
1,881 - -0.5
1,885 - -0.0
1,891 - -1.1
1,896 - 1.9
1,912 + 0.5
1,912 + -0.6
1,914 - -1.0
1,916 - -1.7
1,917 - 0.1
1,919 + -0.0
1,922 - 0.8
1,923 - -1.0
1,934 - 0.9
1,935 + 1.1
1,938 - -0.1
1,938 - 0.3
1,940 - -2.0
1,941 + -0.1
1,941 + 1.4
1,942 + -0.8
1,943 - 0.1
1,944 + 1.1
1,944 - 1.1
1,945 - 1.0
1,945 + 0.6
1,946 - -0.6
1,947 + 1.1
1,960 - -0.2
1,968 + -1.4
1,980 + 0.4
2,015 + 1.1
2,067 - -0.0
2,081 - 2.2
2,091 + -0.8
2,220 + 1.5
2,229 - -0.4
2,235 - -0.9
2,237 - -0.3
2,242 + 0.1
2,242 - 0.1
2,245 - 1.5
2,248 - 0.1
2,251 + 1.5
2,254 - -0.3
2,261 + 0.9
2,262 - 2.4
2,266 + 0.1
2,268 + 0.3
2,400 + 11538 mRNA_3170 0.21 0.1
2,401 - 11538 mRNA_3170 0.21 -0.2
2,404 + 11538 mRNA_3170 0.22 -0.9
2,414 + 11538 mRNA_3170 0.23 -2.2
2,420 - 11538 mRNA_3170 0.23 0.0
2,439 + 11538 mRNA_3170 0.25 -1.2
2,446 + 11538 mRNA_3170 0.26 0.2
2,470 - 11538 mRNA_3170 0.28 0.9
2,516 - 11538 mRNA_3170 0.32 -1.6