Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3140

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3139: 11507 - HMMPfam-Acetyltransferase (GNAT) domain-PF13302,SUPERFAMILY--SSF55729, at 410271 to 410837 11507 mRNA_3140: 11508 - BLAST peptide release factor [Melanopsichium pennsylvanicum 4], at 411347 to 412227 11508 mRNA_3141: 11509 - HMMPfam-Proline-rich nuclear receptor coactivator-PF15365, at 412291 to 413595 11509

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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410,423 - 11507 mRNA_3139 0.27 0.6
410,460 + 11507 mRNA_3139 0.33 0.2
410,477 - 11507 mRNA_3139 0.36 -0.0
410,560 + 11507 mRNA_3139 0.51 -0.5
410,576 + 11507 mRNA_3139 0.54 0.6
410,576 + 11507 mRNA_3139 0.54 0.2
410,587 + 11507 mRNA_3139 0.56 -1.5
410,593 + 11507 mRNA_3139 0.57 -0.5
410,644 - 11507 mRNA_3139 0.66 3.1
410,720 + 11507 mRNA_3139 0.79 -0.6
410,758 - 11507 mRNA_3139 0.86 0.4
410,795 + 2.3
410,798 - 1.8
410,855 + 0.8
410,860 - 1.0
410,866 - 2.3
410,927 + -1.5
410,955 - -0.4
410,963 - 0.6
410,978 - 0.5
410,998 + -0.0
411,007 + 0.6
411,012 - -0.8
411,019 + -0.2
411,021 + 0.3
411,021 + 0.8
411,032 - 0.6
411,045 - 0.6
411,076 + 0.5
411,102 + 0.4
411,118 - 0.2
411,122 - 0.4
411,130 - 2.2
411,141 + 0.5
411,147 + 0.6
411,147 + -0.1
411,155 - 0.1
411,156 - 1.8
411,157 + -0.3
411,163 - 0.5
411,165 - -1.2
411,166 + 1.2
411,168 - -0.2
411,175 + 1.3
411,178 - 3.0
411,180 - 0.4
411,183 + 1.4
411,192 + 2.7
411,193 - 0.7
411,194 - 1.1
411,211 - -1.6
411,218 - 0.0
411,218 - 0.0
411,220 + -0.1
411,231 + 0.3
411,232 - -0.2
411,236 + 0.0
411,237 + -0.3
411,238 + 0.1
411,261 + 0.6
411,262 + -0.1
411,274 + 0.7
411,275 + 0.4
411,276 + 0.3
411,293 - -2.0
411,293 + -1.1
411,295 + 1.9
411,301 - 0.7
411,303 + -0.5
411,310 + 0.6
411,317 - 0.2
411,333 + -0.2
411,381 - 0.6
411,394 + 0.2
411,422 - -0.2
411,435 - 11508 mRNA_3140 0.10 -0.0
411,435 - 11508 mRNA_3140 0.10 0.7
411,436 + 11508 mRNA_3140 0.10 0.7
411,437 + 11508 mRNA_3140 0.10 0.2
411,449 - 11508 mRNA_3140 0.12 1.5
411,454 + 11508 mRNA_3140 0.12 -0.0
411,588 - 11508 mRNA_3140 0.27 2.3
411,595 - 11508 mRNA_3140 0.28 0.4
411,745 + 11508 mRNA_3140 0.45 0.8
411,770 - 11508 mRNA_3140 0.48 1.8
411,815 + 11508 mRNA_3140 0.53 -0.1
411,869 + 11508 mRNA_3140 0.59 -1.2
411,872 + 11508 mRNA_3140 0.60 1.5
411,881 + 11508 mRNA_3140 0.61 -0.8
411,883 - 11508 mRNA_3140 0.61 0.2
411,883 + 11508 mRNA_3140 0.61 0.5
411,900 + 11508 mRNA_3140 0.63 0.6
411,904 - 11508 mRNA_3140 0.63 1.0
412,004 + 11508 mRNA_3140 0.75 0.8
412,011 - 11508 mRNA_3140 0.75 -0.3
412,022 - 11508 mRNA_3140 0.77 1.0
412,036 + 11508 mRNA_3140 0.78 -1.3
412,068 + 11508 mRNA_3140 0.82 0.3
412,138 - 11508 mRNA_3140 0.90 0.2
412,163 - -0.4
412,163 - 1.2
412,163 - 0.2
412,177 + 1.9
412,177 + 0.9
412,183 - -2.0
412,186 - -0.8
412,305 - -0.2
412,315 - 0.5
412,317 - 0.3
412,323 + 0.1
412,351 - 0.7
412,352 + -0.1
412,371 + 0.5
412,452 + 11509 mRNA_3141 0.12 -0.7
412,454 - 11509 mRNA_3141 0.12 -0.7
412,494 - 11509 mRNA_3141 0.16 -0.3
412,611 + 11509 mRNA_3141 0.25 1.5
412,611 - 11509 mRNA_3141 0.25 0.6
412,611 + 11509 mRNA_3141 0.25 0.6
412,636 - 11509 mRNA_3141 0.26 2.1
412,638 + 11509 mRNA_3141 0.27 0.3
412,640 - 11509 mRNA_3141 0.27 1.6
412,641 - 11509 mRNA_3141 0.27 0.6
412,641 + 11509 mRNA_3141 0.27 0.3
412,650 - 11509 mRNA_3141 0.28 0.8
412,770 + 11509 mRNA_3141 0.37 -0.2
412,777 - 11509 mRNA_3141 0.37 0.2
412,782 - 11509 mRNA_3141 0.38 0.5
412,787 + 11509 mRNA_3141 0.38 1.2
412,791 + 11509 mRNA_3141 0.38 -0.2
412,793 - 11509 mRNA_3141 0.38 0.8
412,797 + 11509 mRNA_3141 0.39 -0.1
412,802 - 11509 mRNA_3141 0.39 -0.1
412,803 - 11509 mRNA_3141 0.39 -0.3
412,816 + 11509 mRNA_3141 0.40 0.8
412,817 + 11509 mRNA_3141 0.40 0.7
412,953 + 11509 mRNA_3141 0.51 -0.2
412,957 - 11509 mRNA_3141 0.51 -0.4
413,085 + 11509 mRNA_3141 0.61 0.1