Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3106

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3105: 11473 - KOG1515 Arylacetamide deacetylase, at 334494 to 336059 11473 mRNA_3106: 11474 - BLAST potential peroxisomal matrix Pex8 protein [Pseudo..., at 336211 to 338758 11474 mRNA_3107: 11475 - K11412 SIRT2, SIR2L2 NAD-dependent deacetylase sirtuin 2, at 339155 to 340730 11475

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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335,744 + 11473 mRNA_3105 0.80 0.2
335,862 - 11473 mRNA_3105 0.87 1.3
336,033 + 0.4
336,033 - 0.4
336,034 - -0.3
336,036 + 0.2
336,061 - 0.2
336,077 + -0.1
336,140 - 0.9
336,147 - 0.3
336,159 - -0.3
336,161 - -1.0
336,170 - -1.3
336,173 + 2.0
336,175 - -0.3
336,178 + 2.6
336,187 - -0.5
336,190 + -0.1
336,198 + 0.6
336,205 - -0.3
336,205 + 0.4
336,312 - 0.3
336,323 + 0.8
336,327 + -0.3
336,329 + 0.6
336,341 - -1.9
336,345 + 1.2
336,457 - 1.1
336,459 + 0.3
336,481 - 11474 mRNA_3106 0.11 -0.8
336,485 + 11474 mRNA_3106 0.11 -0.6
336,491 - 11474 mRNA_3106 0.11 1.4
336,634 - 11474 mRNA_3106 0.17 0.2
336,639 + 11474 mRNA_3106 0.17 0.7
336,648 - 11474 mRNA_3106 0.17 1.7
336,649 - 11474 mRNA_3106 0.17 -0.1
336,775 + 11474 mRNA_3106 0.22 0.2
336,787 - 11474 mRNA_3106 0.23 2.0
336,935 + 11474 mRNA_3106 0.28 2.2
337,067 - 11474 mRNA_3106 0.34 1.9
337,070 - 11474 mRNA_3106 0.34 0.3
337,070 - 11474 mRNA_3106 0.34 0.6
337,192 - 11474 mRNA_3106 0.39 0.6
337,232 + 11474 mRNA_3106 0.40 0.3
337,614 + 11474 mRNA_3106 0.55 -0.1
337,654 - 11474 mRNA_3106 0.57 -1.4
337,833 + 11474 mRNA_3106 0.64 0.2
337,956 - 11474 mRNA_3106 0.68 0.3
337,958 + 11474 mRNA_3106 0.69 1.5
337,961 + 11474 mRNA_3106 0.69 0.2
338,104 - 11474 mRNA_3106 0.74 0.7
338,269 + 11474 mRNA_3106 0.81 -0.0
338,282 - 11474 mRNA_3106 0.81 -1.6
338,289 + 11474 mRNA_3106 0.82 -0.7
338,382 - 11474 mRNA_3106 0.85 0.4
338,568 - -0.2
338,572 - 0.6
338,691 - -1.7
338,702 - 0.1
338,704 + -0.1
338,729 + -1.2
338,811 + 0.4
338,850 - -0.6
339,011 + 1.4
339,016 - -0.2
339,021 - 1.4
339,152 - -1.1
339,300 + 0.3
339,310 + -0.5
339,565 - 11475 mRNA_3107 0.26 0.0