Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3091

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3090: 11458 - K03062 PSMC1, RPT2 26S proteasome regulatory subunit T2, at 294926 to 296826 11458 mRNA_3091: 11459 - K13303 SGK2 serum/glucocorticoid-regulated kinase 2, at 296743 to 299433 11459 mRNA_3092: 11460 - KOG4784 Uncharacterized conserved protein, at 300048 to 303992 11460

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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295,895 - 11458 mRNA_3090 0.51 0.6
295,975 - 11458 mRNA_3090 0.55 -1.3
296,131 - 11458 mRNA_3090 0.63 0.6
296,280 + 11458 mRNA_3090 0.71 1.3
296,307 + 11458 mRNA_3090 0.73 -0.3
296,441 - 11458 mRNA_3090 0.80 0.2
296,535 + 11458 mRNA_3090 0.85 -1.4
296,585 + 11458 mRNA_3090 0.87 -0.3
296,678 - -0.0
296,858 - 0.8
296,877 - -0.1
297,195 - 11459 mRNA_3091 0.17 0.1
297,324 + 11459 mRNA_3091 0.22 1.4
297,437 - 11459 mRNA_3091 0.26 0.1
297,582 - 11459 mRNA_3091 0.31 0.6
297,582 + 11459 mRNA_3091 0.31 1.3
297,631 + 11459 mRNA_3091 0.33 0.8
298,048 + 11459 mRNA_3091 0.48 1.5
298,052 - 11459 mRNA_3091 0.49 0.3
298,307 - 11459 mRNA_3091 0.58 0.4
298,493 + 11459 mRNA_3091 0.65 1.1
298,567 + 11459 mRNA_3091 0.68 0.0
298,903 + 11459 mRNA_3091 0.80 0.2
299,218 + -1.1
299,324 - -0.8
299,349 - 0.3
299,472 + 2.0
299,478 - 0.0
299,512 + -0.6
299,627 - -0.8
299,627 - 1.2
299,627 - 0.7
299,633 + 0.1
299,637 - -0.2
299,638 - 0.3
299,638 + -0.5
299,644 + 0.0
299,644 - 0.3
299,648 + 1.1
299,656 - 0.4
299,656 - 0.2
299,783 + 0.0
299,797 + -0.4
299,906 - -0.7
299,974 + 0.6
300,098 - 0.3
300,099 + 0.5
300,110 + -0.2
300,223 - -0.2
300,228 - 0.4
300,246 + -0.2
300,251 + 0.3
300,349 + 2.2