Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_3090

Experiments: YNB Glucose 75mM Methionine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_3089: 11457 - BLAST Rho GTPase-activating protein 30 [Larimichthys crocea], at 293855 to 294427 11457 mRNA_3090: 11458 - K03062 PSMC1, RPT2 26S proteasome regulatory subunit T2, at 294926 to 296826 11458 mRNA_3091: 11459 - K13303 SGK2 serum/glucocorticoid-regulated kinase 2, at 296743 to 299433 11459

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose 75mM Methionine
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294,052 - 11457 mRNA_3089 0.34 -0.6
294,064 - 11457 mRNA_3089 0.36 -1.5
294,079 + 11457 mRNA_3089 0.39 0.8
294,167 + 11457 mRNA_3089 0.54 0.7
294,209 - 11457 mRNA_3089 0.62 0.9
294,360 - 11457 mRNA_3089 0.88 0.6
294,390 + 0.5
294,391 - -1.7
294,542 - -1.3
294,550 + -0.5
294,550 - -0.5
294,550 - -0.8
294,557 + 0.6
294,562 + 0.4
294,563 + 1.8
294,564 - -0.6
294,567 - 0.4
294,595 + 0.7
294,596 - 1.3
294,819 - -0.9
294,833 - 0.1
294,847 + 2.8
294,977 - 1.7
294,984 - -0.4
294,996 + 0.0
295,044 - 0.6
295,138 - 11458 mRNA_3090 0.11 -0.5
295,338 - 11458 mRNA_3090 0.22 2.7
295,554 + 11458 mRNA_3090 0.33 0.7
295,583 - 11458 mRNA_3090 0.35 0.4
295,895 - 11458 mRNA_3090 0.51 0.6
295,975 - 11458 mRNA_3090 0.55 -1.3
296,131 - 11458 mRNA_3090 0.63 0.6
296,280 + 11458 mRNA_3090 0.71 1.3
296,307 + 11458 mRNA_3090 0.73 -0.3
296,441 - 11458 mRNA_3090 0.80 0.2
296,535 + 11458 mRNA_3090 0.85 -1.4
296,585 + 11458 mRNA_3090 0.87 -0.3
296,678 - -0.0
296,858 - 0.8
296,877 - -0.1
297,195 - 11459 mRNA_3091 0.17 0.1
297,324 + 11459 mRNA_3091 0.22 1.4
297,437 - 11459 mRNA_3091 0.26 0.1
297,582 - 11459 mRNA_3091 0.31 0.6
297,582 + 11459 mRNA_3091 0.31 1.3
297,631 + 11459 mRNA_3091 0.33 0.8